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Mutant Lines
12-2288-1

12-2288-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

5 prime edge [+] show sequence
1. Chromosome: 5; Position: 10334313 [Map]; Strand: w
  - AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
2. Chromosome: 5; Position: 10375172 [Map]; Strand: c
  - AT5G28450.1 - [+] show detail - Chlorophyll A-B binding family protein
    Distance: -982; Region: promoter
  - AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-2288-1 - 5-prime edge
```
NTTCCAGGTA CTNAAATACN GANANTGNTA TNNANNNCTN ATNCNNTNNG 
ATGCGATGTG CAGCTGAGAA TANNANAGGA GANNCNGAAA ANTANGAGAC 
TNACNAGCNC ACTTAANGAN TCATATCGAC ACANNNTCCA TGTCCGNGGG 
GGNATTACTG AAGCAGTGCN CNCAAATTTG ACTACTACAA ATTCCTGGCT 
CTCCGATTTG ATTTCCGGCC GTGGGTCAAC ATCATAAGAA AAACGCCGGA 
GGAATCGAGA ATGGTTGAGC AGAATATAAG AGTTCTGGCG CCGGGAAATT 
GATAGCATGA TACTCATTGT CTAAGGTTTT GAAAAAGACG GCCACCGGGA 
AAAGTGAGAC GCGAACTCTG TTGGCGAATT
```
3 prime edge [+] show sequence
1. Chromosome: 5; Position: 10334207 [Map]; Strand: w
  - AT5G28370.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
2. Chromosome: 5; Position: 10375278 [Map]; Strand: c
  - AT5G28460.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
3. Chromosome: 3; Position: 22770923 [Map]; Strand: w
  - AT3G61520.1 - [+] show detail - Pentatricopeptide repeat (PPR) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-2288-1 - 3-prime edge
```
CCTGGATGCG AAGTCTCAGT CTCTGAAACG CCGTGAAGAA TCTCTCTCCT 
TGGCGCTTCA GTCGGTCATT GAATT
```

AT3G61520.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 51879 Blast hits to 14395 proteins in 309 species: Archae - 5; Bacteria - 71; Metazoa - 859; Fungi - 887; Plants - 48189; Viruses - 0; Other Eukaryotes - 1868 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28370.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G28460.1); Has 52907 Blast hits to 14569 proteins in 306 species: Archae - 7; Bacteria - 68; Metazoa - 890; Fungi - 845; Plants - 49290; Viruses - 0; Other Eukaryotes - 1807 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28450.1

Model type: Protein coding
Short Description: Chlorophyll A-B binding family protein
Computational Description: Chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 1998 Blast hits to 1946 proteins in 198 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1792; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G28460.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G61520.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR