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12-2290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
vascular leaf (PO:0009025)
  • abnormal (PATO:0000460)
    (Leaves::abnormal shape)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18291690 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-2290-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCCATACACA TGGATCACAT ATAAGGAAGC CCACGACGCT GCAATTCGGA 
    TTGGATCAGC AATCAGAAGC CGAGGCGTTG ATCCGGTACA ATATTACTAT 
    GTTATGACAT GATCCAATCA ATCAAGTATA TAAATTATTT GAAAGACATT 
    GGCCAAAAAA AAAAGGTTCT TATTTTTNTT ACTTTTTTTG GGGAGTAGGG 
    ACNCTGTTGN GGTNTTTACG GANCTAATTG TCCAAAANGG ATTNTTGCAN 
    NGGAGGTAAA AAATAAAAAT ANATCTNTNT NTAAAATTTA GGGTTNAATT 
    TTCCTTTTTA TTATAAAGTT TTTTTGTTTT GAAANAAATN TANATNATTG 
    AAATTGAAAA GGGCCTTTNG TTNTAAAGTT TNTNTAAGTT GTTNTNTTGC 
    AGGCCTGCNT NACCCANGGG ATNACCTACG NNCCTNTNTA CAATTNTTTA 
    GGTNCCCTNT NTNCNTNGAT NTNTNCCGAN CAATNTNTNT NCAACATTTT 
    NTNTTAGGCT GGCCTTCATA TTATNTNTAT NTNCATGAGT TNTNAAAACC 
    TANNCCGAGG TTGAATGTCA ATGTAACAGG CGTAAACCCA GTTNAATTAC 
    NANCCCGGGC NGNNNACCAC CCGGNCCNTT TAA

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR