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12-2290-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage
Phenotype
vascular leaf (PO:0009025)
  • abnormal (PATO:0000460)
    (Leaves::abnormal shape)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18291690 [Map]; Strand: c
      • AT1G49430.1 - [+] show detail - long-chain acyl-CoA synthetase 2
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: 12-2290-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    TCCATACACA TGGATCACAT ATAAGGAAGC CCACGACGCT GCAATTCGGA
    TTGGATCAGC AATCAGAAGC CGAGGCGTTG ATCCGGTACA ATATTACTAT
    GTTATGACAT GATCCAATCA ATCAAGTATA TAAATTATTT GAAAGACATT
    GGCCAAAAAA AAAAGGTTCT TATTTTTNTT ACTTTTTTTG GGGAGTAGGG
    ACNCTGTTGN GGTNTTTACG GANCTAATTG TCCAAAANGG ATTNTTGCAN
    NGGAGGTAAA AAATAAAAAT ANATCTNTNT NTAAAATTTA GGGTTNAATT
    TTCCTTTTTA TTATAAAGTT TTTTTGTTTT GAAANAAATN TANATNATTG
    AAATTGAAAA GGGCCTTTNG TTNTAAAGTT TNTNTAAGTT GTTNTNTTGC
    AGGCCTGCNT NACCCANGGG ATNACCTACG NNCCTNTNTA CAATTNTTTA
    GGTNCCCTNT NTNCNTNGAT NTNTNCCGAN CAATNTNTNT NCAACATTTT
    NTNTTAGGCT GGCCTTCATA TTATNTNTAT NTNCATGAGT TNTNAAAACC
    TANNCCGAGG TTGAATGTCA ATGTAACAGG CGTAAACCCA GTTNAATTAC
    NANCCCGGGC NGNNNACCAC CCGGNCCNTT TAA

AT1G49430.1

Model type
Protein coding
Short Description
long-chain acyl-CoA synthetase 2
Curator Summary
Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. Required for repression of lateral root formation.
Computational Description
long-chain acyl-CoA synthetase 2 (LACS2); CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT1G64400.1); Has 53337 Blast hits to 50359 proteins in 3209 species: Archae - 917; Bacteria - 34261; Metazoa - 2388; Fungi - 2032; Plants - 1855; Viruses - 1; Other Eukaryotes - 11883 (source: NCBI BLink).
Link
InterPro Scan - TAIR