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12-2314-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18385692 [Map]; Strand: w
      • AT1G49670.2 - [+] show detail - ARP protein (REF)
        Distance: 0; Region: intron1 (CDS)
      • AT1G49670.1 - [+] show detail - ARP protein (REF)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-2314-1 - 5-prime edge 
    TCTGCAAGAG CTAAGCAGAG AGCTCGACCT ACACATAATT GAACCATCTC 
    ATCACCAAAA ATATCACATT GTATTACTTA GTAAAGAGAG AGTGACAATA 
    GTACTGACGT GCTTTTTCAA TACCCAAACA AAAAGTACTG AGCCTTCTTT 
    CATCATGGTA AAAAAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 18385576 [Map]; Strand: w
      • AT1G49670.2 - [+] show detail - ARP protein (REF)
        Distance: 0; Region: exon2 (CDS)
      • AT1G49670.1 - [+] show detail - ARP protein (REF)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-2314-1 - 3-prime edge 
    CTTGCAGAGA AAGGAGTTTT TGTAACAGTC GCTGATTTTT CGGAGGAGAA 
    AGGACAAGAG ACTACTTCGC TTGTTCGAGA AGCGAATGCC AAGTTTCATC 
    AGGGCTTAAG CT

AT1G49670.1

Model type
Protein coding
Short Description
ARP protein (REF)
Curator Summary
molecular function has not been defined. Was shown involved in oxidative stress tolerance.
Computational Description
NQR; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity, zinc ion binding; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1); Has 139834 Blast hits to 139487 proteins in 3900 species: Archae - 1368; Bacteria - 93458; Metazoa - 6844; Fungi - 8617; Plants - 3827; Viruses - 2; Other Eukaryotes - 25718 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G49670.2

Model type
Protein coding
Short Description
ARP protein (REF)
Curator Summary
molecular function has not been defined. Was shown involved in oxidative stress tolerance.
Computational Description
NQR; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress, metabolic process; LOCATED IN: mitochondrion, peroxisome; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Short-chain dehydrogenase/reductase, conserved site (InterPro:IPR020904), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198), GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Quinone oxidoreductase/zeta-crystallin, conserved site (InterPro:IPR002364), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37980.1).
Link
InterPro Scan - TAIR