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Mutant Lines
12-2327-1

12-2327-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 1; Position: 23227592 [Map]; Strand: c
  - AT1G62710.1 - [+] show detail - beta vacuolar processing enzyme
    Distance: -676; Region: promoter
  - AT1G62720.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-2327-1 - 3-prime edge
```
ATAGATTACG AATAAAACGA GGTTAATAAT TCAAATGCGG AGA
```

5 prime edge [+] show sequence

Chromosome: 1; Position: 23227464 [Map]; Strand: c
- AT1G62710.1 - [+] show detail - beta vacuolar processing enzyme
  Distance: -548; Region: promoter
- AT1G62720.1 - [+] show detail - Pentatricopeptide repeat (PPR-like) superfamily protein
  Distance: -68; Region: promoter

TAATCTATGT ATCTGTAAAT GGGGGCTAAA ACCCTCTTAT CTCCTCCATG 
GGAGAGAGAC GATGATGAGA GCGAGATATG AAGACCGGTT CAATTCCGGT 
TTACTATTTT CTAATTAAAC TGGGTTAATA GTCTAATTTC AAAATTATTT 
TAGAGCTCTG GGTTAATTAA TTAGTGCCGT TGTAACGGTG AAATAATATC 
GGTTGTGGGT CCATTAAGTG TACACGTGTT CGGACTATAA TTTGCATGTT 
CTCTGTTGTG TCGCGAAGCA GACCAATTCG TTGATTTTAT GAGATCAGCA 
GAGTAATATT CCAAAATATT CAATCGTCGA

AT1G62710.1

Model type: Protein coding
Short Description: beta vacuolar processing enzyme
Curator Summary: Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.
Computational Description: beta vacuolar processing enzyme (BETA-VPE); FUNCTIONS IN: cysteine-type endopeptidase activity; INVOLVED IN: proteolysis, response to salt stress, vacuolar protein processing; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: gamma vacuolar processing enzyme (TAIR:AT4G32940.1); Has 785 Blast hits to 783 proteins in 241 species: Archae - 4; Bacteria - 10; Metazoa - 274; Fungi - 115; Plants - 253; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G62720.1

Model type: Protein coding
Short Description: Pentatricopeptide repeat (PPR-like) superfamily protein
Computational Description: Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT1G62680.1); Has 62070 Blast hits to 15065 proteins in 304 species: Archae - 4; Bacteria - 67; Metazoa - 643; Fungi - 921; Plants - 58400; Viruses - 0; Other Eukaryotes - 2035 (source: NCBI BLink).
Link: InterPro Scan - TAIR