1. Home
  2. Mutant Lines
  3. 12-2346-1

12-2346-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20714069 [Map]; Strand: w
      • AT1G55480.1 - [+] show detail - protein containing PDZ domain, a K-box domain, and a TPR region
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-2346-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCTT 
    CTTCTTCTTC TCCGTCTCCT CCTGCTTCAG CTTTAGCTGA AGACTCTGTC 
    TCCGACGCCT TCAAAGCTAA ATTCCGGCGT TTGGCAACAT GGGTATTGCA 
    TAAAGAAGCC GAATTGCTCG AAAGGAAGAG ACCTTTTGGC NGGAAATGAA 
    ACTTGGATTG AGTGATCAAA CTAGGGTTTT GCTTGGTTTG CTGGGTTCTT 
    GGCAGTGAAG GCGAAGAATA CAGAGATGGA TAACTGCTCG GAGCTAAAGA 
    CATGGTGAGA TTCTTTTTCT TTAAGTTCGA GCTCAGACAC AAGCCAGAGC 
    CAGAGAGACA GATGATGATT AGTTGGATTT TGTTAGTTGA AGAAGACGAT 
    TATGTGACGT TGGTTGGTTT TTCGCAAAAG CT

AT1G55480.1

Model type
Protein coding
Short Description
protein containing PDZ domain, a K-box domain, and a TPR region
Curator Summary
Encodes a member of a novel plant protein family containing a PDZ, a K-box, and a TPR motif. mRNA but not protein levels decrease after wounding. ZKT is phosphorylated at Thr and Ser residues after wounding.
Computational Description
protein containing PDZ domain, a K-box domain, and a TPR region (ZKT); FUNCTIONS IN: binding; INVOLVED IN: response to wounding; LOCATED IN: chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), PDZ/DHR/GLGF (InterPro:IPR001478), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: rubredoxin family protein (TAIR:AT5G17170.2); Has 316 Blast hits to 316 proteins in 83 species: Archae - 2; Bacteria - 103; Metazoa - 8; Fungi - 2; Plants - 160; Viruses - 0; Other Eukaryotes - 41 (source: NCBI BLink).
Link
InterPro Scan - TAIR