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Mutant Lines
12-2424-1

12-2424-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 3; Position: 1954513 [Map]; Strand: w
- AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
  Distance: -4724; Region: intergenic
- AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
  Distance: 477; Region: intergenic

NGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
CCCATCCTAC TCGATCAATT ATTGGTCTCC TTGTGAAATT TTGTTTTATT 
TGCTCCGAAA TATTGAGTTT AGTTTGAGAT GGTGCCAACG CGTCATTAAT 
CACTATTGAA CTAAAATAGA GGCATTAATT AAGTAGTTAT AAACTCGTTG 
GAAACAGAAA AGTTTTAAAT CCTCATGTTA GAAGTGATGA TTAAGAAGGA 
ATAAAATATG TAATCGGAAC ATAAAATGTG TATAAACAAA AGAGGCAAAA 
TAAACTTGTA GAGAAGATTA ACCATATGAT GGATGGATAT ACATAAACAA 
TATTCTAAAA ATTGCGGTTT TCTTAAAAAC CTTATCGCAT AAAACACACA 
ATCCAAGTCG TAGGGTACAC GTTTACCGCC GCACCGACAT TGCAATTTCT 
TTAGGTCTCA TTTTACCACA TCTCCCCAAA CTTACGTGCT TCCACGAAAG 
TATCTATATT CTTTTCTTTT TTTATAGGGA AGAACAAAAC GCAAAAAGAG 
TTTCGTGTGA ATCATCATCA CTTGGTCTTA TTATTATTGC CATAGTTGGA 
TTATACATAA TTTACAAAGT CAAATGTCTT TCTTTTTTTT AGCTTTTCTG 
TACAATGTCA GCTAACANCA NCATTANCAG TANCANCAAG AGCTGACGTT 
TTTCCCANCN TAGGAATCAA ACAAATGGAT TNTTCAAAGN GCGCTTCNAT 
TTCATNTGAA NCGACAAATC TTTTGTTGCC NA

3 prime edge [+] show sequence
1. Chromosome: 3; Position: 1954434 [Map]; Strand: w
  - AT3G06410.1 - [+] show detail - Zinc finger C-x8-C-x5-C-x3-H type family protein
    Distance: -4645; Region: intergenic
  - AT3G06420.1 - [+] show detail - Ubiquitin-like superfamily protein
    Distance: 556; Region: intergenic
Flanking Genome Sequence: 12-2424-1 - 3-prime edge
```
GATGTTACGA TGCCATCCAT GTCCAAAACT ATTTGGATCA AAGCT
```

AT3G06410.1

Model type: Protein coding
Short Description: Zinc finger C-x8-C-x5-C-x3-H type family protein
Computational Description: Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G06420.1

Model type: Protein coding
Short Description: Ubiquitin-like superfamily protein
Computational Description: autophagy 8h (ATG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G15580.1); Has 1476 Blast hits to 1474 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 722; Fungi - 178; Plants - 301; Viruses - 3; Other Eukaryotes - 272 (source: NCBI BLink).
Link: InterPro Scan - TAIR