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12-2448-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 1023484 [Map]; Strand: w
      • AT4G02320.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-2448-1 - 3-prime edge
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCA 
    CGACTAACGA TTATAATGTT TATTGTGATT CACTAATCAG CTAGTTTTTA
    CTTTTGTAAA TGATGTGCAG GCGTGAGAGG TAGTGGCTTC ATAGCTAAAG
    ACTTATCATT CGTGAATTAT GCCGGACCGG AAAAACACCA AGCNTGTGGC
    ATTACGAAGT AGCTCTGACC TCTCTGCTTA CTACCGATGC AGCTTTGAGA
    GCTACCAAGA CACCATTTAC GTCCATTCAC ACAAACAGTT TTATCGAGAA
    TGTGATATAT ATGGCACAGT CGATTTCATA TTTGGTGACG CATCGGTTGT
    GTTCCAGAAT TGTAGTCTCT ATGCTCGTAG ACCAAATCCT AACCAGAAAA
    TCATATATAC CGCTCAAGGC CGGGAAAACT CACGTGAACC CACTGGTATT
    TCTATAATTA GTAGCAGGAT TTTGGCGGCA CCTGACTTGA TCCCTGTGCA
    ACCCAACTTC AAAGCATATT TAGGTCGTCC GTGGCAACTA TATTCTAGGA
    CGGTTATTAT GAAATCGTTT ATTGATGACT TGGTGGATC

AT4G02320.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02300.1); Has 2764 Blast hits to 2709 proteins in 322 species: Archae - 6; Bacteria - 570; Metazoa - 1; Fungi - 200; Plants - 1958; Viruses - 0; Other Eukaryotes - 29 (source: NCBI BLink).
Link
InterPro Scan - TAIR