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12-2454-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23147481 [Map]; Strand: c
      • AT3G62580.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-2454-1 - 3-prime edge 
    TATGTAAGTG GCTATTCCCC TCCAATTGCA TAGAAAAATG CATACAAGAT 
    CCTAATGAAC CAGTCAATGG CCTTTGCTTT GGTGTATGTA GATGATGAAA 
    CAAAGGCACA AAGTAGAGAG GGAAAACAAC ATTGGAGATG AAGTTGGTTG 
    GTCCAAGAAC AGAGAAAAGG CAAAGAGTAT CCCAAAGCTA GCTGCTATGA 
    ACAAGAAGTT TGGAATGATT CACGGGTTAT CATCCCTTGC TAACATCTTT 
    TCATTTGGAA GCCTTGCTAT GCATTCTTGG TATCTAGCTG GGAAGTTGAA 
    TCTCTAGTTT CCTCCTCAAT ACTCATCTTG TCACAAAGGT CTGACCTTTT 
    ACGCCCCCTT AATGAATAAA TCTCTTGCAT TTCCTCGCCA ATCCCTTTGT 
    AAGATTGTGT CAGACTCCAA ACATATTTCA GTGAAATCAT GAAAGAAATT 
    GTTACCAAGC ACTCTTGTAC GAAGATACTT CCTGTCTTTC TCTAAAAATA 
    ATCCATGTTT GATAGATTCT ATTACAGAAT AGGCCTAAGC TGCTTCACTT 
    GAAGAAACTA AAATGTGCTT GTGAATGGTG AAAGACCACA CTGTAGACAC 
    TCATTATTAA CAATCTAATT GGGAGAAAGA AGATGATCAC TAGTTGACTA 
    CTCCTTGATG CCACGAATCT TGTTATGAGT TTCAAAGAAT CTCTCCCACT 
    AAATAAAATG TTTATAATAA AGAACTTGCG CAGCCATTGA TCCCGCTCAG 
    CTTTCATCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23147365 [Map]; Strand: c
      • AT3G62580.1 - [+] show detail - Late embryogenesis abundant protein (LEA) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-2454-1 - 5-prime edge 
    CTTACATCGA TGGTCATGGG AGTGAAGACA AACAAATTGG TGAGATTGAA 
    AGCAAAAGCG GATAGGAGAA ACCCTATCTG ATATTTCTCG ACCGTAGAAG 
    ATGACTTCCA TGGATGCAAA TAACCAAAAG CAGAGAGTGA AATTGCGCAG 
    CAAGAACCAA CCAAAGTGAA GTAAGCTGGA AACAACTTGC TCTGAAGATT 
    ACCAAACTGA TGCCTCGGTA AATTCCTGAT CAGTCAATAC AAGAGAGAAA 
    AATAAATCAC ACAGAATCCA AATTGATTGG ATAGAGATAG AGATGCGTAC 
    TTGAACATGA TGATTCCTCC GATGAAGGTA GCCCAGAGAG CAGCTCCCCA 
    AGCTGTAGCG AAACTGAGTA GATGAGCTAG CTTCAGGAAT ATCGAAATCT 
    TCGCCGAATT

AT3G62580.1

Model type
Protein coding
Short Description
Late embryogenesis abundant protein (LEA) family protein
Computational Description
Late embryogenesis abundant protein (LEA) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: late embryogenesis abundant domain-containing protein / LEA domain-containing protein (TAIR:AT1G72100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR