1. Home
  2. Mutant Lines
  3. 12-2465-1

12-2465-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26393566 [Map]; Strand: w
      • AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: 12-2465-1 - 5-prime edge 
    GNAANNANAA TCGGNGCGAC AAGGGCTTNT TANANAANGA ANACANGATN 
    NCGTCNCNAA CNANCNAANG ANNNATCCAC ATGATGGGAT NCNTGGCNGG 
    GNGTGTCCAT NNAGATTCTT GGCATNGGNN TTCGGAGCAA CCAATTGGCT 
    AAGGAATCTT ATAATCGGGG AGAATGCCCC GTTGCGAGTG ATCCAAGACT 
    CAGTAAAGCT ACTTGGGTAT GAACTCATCT TTTTTTGAAT ATGGAAATTA 
    CAATTACATC ACGACTTTGC GCCTAATAGT TGACTTGGCA GGGAGGGCAC 
    AATTCCTTGC ATCACACTCA TACTGGGGGG AAACCTGATT CAGGGTCTGC 
    GTTCATCAGC TGTGAAGAAA TCAGTGATTG TGGGAGTGAT AATTGTGCGC 
    TATATCCTCC TTCCCGTGGT GGGAGTCGGG GTGGTTCAAT TAGCAGGAAA 
    TCTAGGCTAT CTTCCTCCAG ACCCTNTNTT TCGATACGTT CTCATGCTTC 
    AGTTCNCACT ACCGCCTGCC NTGAATATTA NTAATNACTC AAGCCATCCC 
    NCNNNANTNN ATTGNNNGCT NGATACGGAT GANTNATCNT ACNCCTATAT 
    ATATATGGAN TNNAGGCNCA NTGGCAAACN GNNNGNCGGG GNNNAANANN 
    ANTGNTGGNC NTNTTTNGGG GNCCNACCGG GNGNATNNTT NCNTGNNGGG 
    NNGGGNAAAN ATTNNTCTN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26393454 [Map]; Strand: w
      • AT5G65980.1 - [+] show detail - Auxin efflux carrier family protein
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 12-2465-1 - 3-prime edge 
    GTGGGTGGTG CGAAGAGTTC CTCAAGAATC TGATGGAGCA AGTCCTTGAT 
    GTATGTCCTG GTAGACACTT TTTGTTTGCC TTGGATTTCA AGGTCTTGGT 
    TTTGGTGCGG CTTGAGGAGA AGAGCGTGGG GATCAGAGTC GATGTCCTTG 
    TTGGGAGACT TGACCAACCC GGCGGCTTCA AGAGCTCTAA ACTGTGTAGC 
    AGAGCTTCTT ACCAGTTGGT AACNTGTACG TCCATATGTA GAAACCCCCG 
    AGCTGCCCTT GACAAAAATT AATCACACGA TCAACTCAAC AATTAAGTCT 
    GAGCAGAGAT CAGAAGATCA TATGTATGTA TGTTTGACTT ACGGCCATAG 
    AGAAAGATGC GTAGGAGAGC CCAATGGATC TGCAGACACT ACGATTCCCA 
    AAAGGACTGC CTTCCTCGTC ACAGATGGCA GGGACCAGTA TAAGCATAAG 
    GTTCCCCATA TTGCCTACGT AGACAGGACA GTAAATATGA TTCATGTGAG 
    AATT

AT5G65980.1

Model type
Protein coding
Short Description
Auxin efflux carrier family protein
Computational Description
Auxin efflux carrier family protein; FUNCTIONS IN: auxin:hydrogen symporter activity; INVOLVED IN: auxin polar transport, transmembrane transport; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G17500.4); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR