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Mutant Lines
12-2479-1

12-2479-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 5; Position: 322116 [Map]; Strand: c
- AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
  Distance: 0; Region: exon1 (CDS)

CGGGCCACAG TATCTGACTT TGCGAGCGCC CGGAGCTCGA ACACGACACC 
GTTAGAATCT GCCACGGAGA GCTTCTCGAT GAGAAACGAA ACCATCATCT 
TCGTAAACTC CACCGCCTCC TTGCACGGCG CAGGTTCTCC GCCGCCGTCA 
CCGTATAATT CGAACGGTAT CTTCTGATCG CGGCACCACA AAACGATGAG 
GTTCTTCAAG GCACGGTTAG GTACGAGGCT GGTGTGTTTG AGGACTTGAC 
CTGTTTTCGG ACACGTGTTA TGCCCCGATT GGATN

3 prime edge [+] show sequence

Chromosome: 5; Position: 322232 [Map]; Strand: c
- AT5G01830.1 - [+] show detail - ARM repeat superfamily protein
  Distance: 0; Region: exon1 (CDS)

GTGGCCCGAG CCCGCATAGC CGAGGCTGGA GCCATACCCA AGCTGGTTCG 
CTATCTAGCC ACAGAGTGCC CGAGCCTTCA GATAAACGCC GTTACGACGA 
TCCTAAACCT ATCCATCCTG GAACAGAACA AAACGAGGAT CATGGAAACT 
GACNGGAGCT TTAAACGGCG TCATCGAGGT TCTTCGTTCG GGTGCCACGT 
GGGAGGCTAA GGCTAACGCA GCCGCGACAT TGTTCAGTTT GGCGGGCGTC 
TCGGCATACA GAAGAAGACT CGGGAGAAAA GCACGTGTCG TAAGCGGATT 
GGTTGACTTG GCTAAGCAGG GCCCC

AT5G01830.1

Model type: Protein coding
Short Description: ARM repeat superfamily protein
Computational Description: ARM repeat superfamily protein; FUNCTIONS IN: ubiquitin-protein ligase activity, binding; INVOLVED IN: response to chitin; LOCATED IN: ubiquitin ligase complex; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: U box domain (InterPro:IPR003613), Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: plant U-box 17 (TAIR:AT1G29340.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR