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12-2481-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 499752 [Map]; Strand: w
      • AT3G02420.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -911; Region: promoter
      • AT3G02430.1 - [+] show detail - Protein of unknown function (DUF679)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-2481-1 - 5-prime edge 
    GATGGAACTA TCTACTTCGG TTTCGTAACG TTCAAAGGCA TGTGGGTCGT 
    TGACTATCCT GACCCGTCCG GGTTAGGTTT ACCCGATTTA GCCAAATATC 
    GGATGCGGTT CGTTGATTGG ATC

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 499636 [Map]; Strand: w
      • AT3G02420.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -795; Region: promoter
      • AT3G02430.1 - [+] show detail - Protein of unknown function (DUF679)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-2481-1 - 3-prime edge 
    GTTCCATCGT CGGCTTTAAC GCTATCGGTA AAGGAGCTGA CGAAGCAAGA 
    CGCGGCTAAG AGGAAAAGGA GAACGGCGGT TAGGAAACGC GTTGCGTGGT 
    CGCAAACGCC GTTTGAAGTG AAAACCGGCG TTAGGAGTTG AAACGCGAGG 
    AGTGTTCCCG TTGGGAGTAG GTTTGAGAGA TTGGCTGCTG ACGTCAGGGT 
    GTTTGACATG GCTCGCTGAG ACATTGACAT CTGTCTCTTG AGCACCCGGG 
    ATTCTGACGG TGTCTGATCG GATAACTCGT CGAGCTCCGG AGCCGGAGTG 
    TTTGCGTTTC TTAGCCGAAG GGCAGACATC TTTTTAGTTT TGATTCTTTT 
    CAGGTTTCGA TCGTTGGATT GATATTGGTG AAGATAATGA TGATGATGTT 
    TTTTTATAGA TGCTACGATA TAGAAACAGC TAATGATAAC TTAGTTTACG 
    CATAGTGGAC TGTCTGTATT TAAGTAATCT CTCTGTTCAG TTAACTTGTA 
    CGATAAACAA CATTATACAC GACAAATAAT ACAAGACTTT TTAAAGCT

AT3G02420.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0121 (InterPro:IPR005344); Has 72 Blast hits to 71 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 60; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G02430.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF679)
Computational Description
Protein of unknown function (DUF679); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF679 (InterPro:IPR007770); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF679) (TAIR:AT4G24310.1); Has 267 Blast hits to 259 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR