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12-2482-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1991539 [Map]; Strand: w
      • AT2G05435.1 - [+] show detail - transposable element gene
        Distance: 1672; Region: intergenic
      • AT2G05440.1 - [+] show detail - GLYCINE RICH PROTEIN 9
        Distance: -1543; Region: intergenic
    Flanking Genome Sequence: 12-2482-1 - 5-prime edge 
    GNNTACACAN GGTNACCGAC NNAGNCTCNT CANNANNGAA NGCGGATCAN 
    GCAGNCNNNN GGAAAGTNCA ACTGCATCTT NCGTNGAGAC TGNGGNNCGG 
    ATAACTGAGN CCAGATNACT TATACAGGCT NATNAANCAC ANGNAGGAGT 
    ATCATTNAAA TTTATGTATT TTTGATAATT ACGAAGTTAT CATATACCCA 
    TTTGGACTCT AGCCTCTCTA TATCATAAAA TCAGTTATGT GAATTGTAGT 
    GGCTAGTAGA ATANGAGTTA GTATAAGTGT ATTTGTTTGT TTTATTAGNN 
    ANAAGTCGCT TGTCTTATTC TCAAATAGTA ATTTGTATAG ATATATAGAT 
    AGATACAATA AAGTATCAAA CTAGTAGAAA ATCGGTACCC AATCTAATTC 
    ATTAGTAATC AATTCATATC TAACAATATT TTATGTGTTA ATATATTGGC 
    AACAACTTCA TCAAATATGT GGCAACGATT ACATCAACGT CGTAAAAAAC 
    GTGGCATCCA CGTCAGTAGC CATGAGAAAA GATATATGGT TTCACACCGA 
    TTCAATAAAT TTAGATATAA AGTTTAAATT ATTGAAATAT NGGATATATA 
    TTAGCATANA AATTNTTGTA GGNAGAATTA AATACATATA CTTTACTTTA 
    ATATGNAAAT GACCGNACTT TGTTCAAATT TTGCAAAGGA AAACGCTAAG 
    AAATTCACTT TTGAGNAAAA TGCAAGTNAA AAGATGGGAC CTNCAAGAAT 
    ANACTNAGAG ANNG

AT2G05435.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
non-LTR retrotransposon family (LINE), has a 6.5e-19 P-value blast match to GB:NP_038602 L1 repeat, Tf subfamily, member 18 (LINE-element) (Mus musculus)
Link
InterPro Scan - TAIR

AT2G05440.1

Model type
Protein coding
Short Description
GLYCINE RICH PROTEIN 9
Computational Description
GLYCINE RICH PROTEIN 9 (GRP9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT2G05510.1); Has 109633 Blast hits to 26829 proteins in 1834 species: Archae - 115; Bacteria - 41993; Metazoa - 34143; Fungi - 5967; Plants - 10276; Viruses - 1307; Other Eukaryotes - 15832 (source: NCBI BLink).
Link
InterPro Scan - TAIR