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12-2525-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28315795 [Map]; Strand: w
      • AT1G75450.1 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: intron4 (CDS)
      • AT1G75450.2 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 12-2525-1 - 5-prime edge 
    GGTAANNNNA NGGGNAGGAC CTAGAGAACT ACCACTNCGN GCGCAGGATC 
    ANCATNNTTN NGAAGCCAAN GAATCAGTGC GAATGANGGA TCAACANCCC 
    GGGCCGGCGN ANNACGNAGT GNGCTANATG CACATGTGGA CAAAAGNATN 
    NAGGACANNG NCATGTACCA CGTGTGCTAG TATATTTTCA ATTTTGACAA 
    ACTTTTTTTC TTGGACCACT AATTAATCCC CACAAGTGTA ACTTTGCATG 
    CATGCAATGC AAAACTCGTT TTATTCTTTT TTTCTAGAGA AGAAATTTAG 
    AAGTAGTAAT CAATGGTAAT GTCAAGACTT ACTTGTCTTT GTTCATGGGG 
    TAGATAAGAA TAGGGCCACT TGTTTTATTT CCCAAAATGC CCTTGAAAAC 
    GCCTTTATCG AAGTCAGAGA TTCTTGATTT TGGCACGAAG AGGTTGAGCC 
    ATGGGTGTGG AACCTCCCAT AAATTCTTGG ACCGGAGCTT CAATTNGGCC 
    TTGTGTACCC GGTCGANAAA GTCCACATAT TGTAAATNCG TTGTAAAGAC 
    CGATGTCGGT ATGAAATTCA ATTTCTTCAT CANAATCTCA ACTTCCTGAA 
    ACAAAAAAGA AAAAAAATCG NNATTTAAAT ATACAAAACT CTGGAATGGG 
    AAAAATAAAA AAACCGGGTT GCNNGTAAAA AGCNNACCAA NACCNAGGGA 
    TAAGTNAAAA ATNCNNGNAA AGGGGGTTTN TNANAATTAA ANCTTAGAGT 
    AANGAGGANT C

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 28315686 [Map]; Strand: w
      • AT1G75450.1 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: intron4 (CDS)
      • AT1G75450.2 - [+] show detail - cytokinin oxidase 5
        Distance: 0; Region: intron4 (CDS)
    Flanking Genome Sequence: 12-2525-1 - 3-prime edge 
    ATGGTGGGTG GGTCCCAATC AGATTCTCCT AGACCAAACC GATCTCAACG 
    AACCCTCCAC ACATCATTGA TTATTACATT AATATAGATA TTGTCGTTGC 
    TGACGTGTCG TAATTTGATG TTATTGTCAG ATGGGACGAG AGGAGCTCAG 
    CCGTGACGCC GGATGAGGAA GTTTTCTATC TGGTGGCTCT ATTGAGATCA 
    GCTTTAACGG ACGGTGAAGA GACACAGAAG CTAGAGTATC TGAAAGATCA 
    GAACCGTCGG ATCTTGGAGT TCTGTGAACA AGCCAAGATC AATGTGAAGC 
    AGTATCTTCC TCACCACGCA ACACAGGAAG AGTGGGTGGC TCATTTTGGG 
    GACAAGTGGG ATCGGTTCAG AAGCT

AT1G75450.1

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1); Has 6615 Blast hits to 6610 proteins in 1194 species: Archae - 154; Bacteria - 4290; Metazoa - 145; Fungi - 1218; Plants - 369; Viruses - 0; Other Eukaryotes - 439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G75450.2

Model type
Protein coding
Short Description
cytokinin oxidase 5
Curator Summary
This gene used to be called AtCKX6. It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins.
Computational Description
cytokinin oxidase 5 (CKX5); CONTAINS InterPro DOMAIN/s: Cytokinin dehydrogenase 1, FAD/cytokinin binding domain (InterPro:IPR015345), FAD-binding, type 2 (InterPro:IPR016166), Oxygen oxidoreductase covalent FAD-binding site (InterPro:IPR006093), FAD-linked oxidase-like, C-terminal (InterPro:IPR016164), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: cytokinin oxidase/dehydrogenase 1 (TAIR:AT2G41510.1).
Link
InterPro Scan - TAIR