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12-2547-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7892593 [Map]; Strand: w
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: -2413; Region: intergenic
      • AT5G23430.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 1078; Region: intergenic
    Flanking Genome Sequence: 12-2547-1 - 5-prime edge 
    GATAATGCTA GCTACTTCAC TGTCAATTTT CACATCTCCC TTTTTTTATA 
    TTTTATTATT GTAGAGAAAT AAAAATTATT TTGTTAGGTA GTTGATGACA 
    ATTCCGTTAC ATGGTTTTGG CAATTTCGTT TTCTCAAGAA AACTCTAGTC 
    TGTTGGATTT ATTGCAGTTT TTGCAGATTT TCTCTATTCT CTTTTATTAC 
    TTCTTGTGTT TTTTGTTTTA TTATGTCTCT ACTTTCGACA AGTTTATCTT 
    TCTTCTTCCT CTTCTTTAAA TGTGTAATGC AGTACATTTG ATTTGGCCTC 
    TATCACCTAC CTCAATGGAT CTTTTGTTAA CAGATTGCAT TAATGGTGGT 
    TGAGTTCATT TTTCATGGTT TAAGTAATAA AAATACTTAA ACAAAGGCCA 
    AGGAAATACT ATTTTGTGAA AAATGATCCA ATAAACTAGG CCTGGGCAAA 
    AAAACCGCTA ACCGATTAAC CGAACCGAAC CGAACCGAAA AACATGGTCC 
    GGTTCGGGTT TGGATAGCTT AAAATAACTG GCTGGATATT ATATGTCTTA 
    GATTTCAGTT TCGGTTTCGG TTATGTTCGT AACCGATAAC CAAAGGATAA 
    CCAAAGCATA TATGTATGAT AGATAATATA TCACATATAT TGTATGTATT 
    GACACTTAAC TATGTTTTTC TCTTTATTAG TTTGCAAGTT GAAATTAGTG 
    AGTGNGAATA AGGNGTTTAA TATTATGGAN AGNTGGACCA TC

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 7892477 [Map]; Strand: w
      • AT5G23420.2 - [+] show detail - high-mobility group box 6
        Distance: -2297; Region: intergenic
      • AT5G23430.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 1194; Region: intergenic
    Flanking Genome Sequence: 12-2547-1 - 3-prime edge 
    GCATTATCCC ATGCCTCTGC TCTGCGTTTA CGTTAAGAGA CAACGACCAA 
    ACAAGCT

AT5G23420.2

Model type
Protein coding
Short Description
high-mobility group box 6
Curator Summary
Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.
Computational Description
high-mobility group box 6 (HMGB6); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages.
Link
InterPro Scan - TAIR

AT5G23430.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G08390.1); Has 113433 Blast hits to 41213 proteins in 1020 species: Archae - 84; Bacteria - 12091; Metazoa - 46348; Fungi - 25039; Plants - 14792; Viruses - 6; Other Eukaryotes - 15073 (source: NCBI BLink).
Link
InterPro Scan - TAIR