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Mutant Lines
12-2556-1

12-2556-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 20674839 [Map]; Strand: w
  - AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -476; Region: promoter
  - AT1G55370.1 - [+] show detail - NDH-dependent cyclic electron flow 5
    Distance: 0; Region: exon1 (5UTR)
  - AT1G55370.2 - [+] show detail - NDH-dependent cyclic electron flow 5
    Distance: 0; Region: exon1 (5UTR)
Flanking Genome Sequence: 12-2556-1 - 5-prime edge
```
TTTGAANATA AGGCCANATT GTGAGTGTTG TCTTCTTCTT CTTTCTCTAT 
GGCTAAACTC TGAAACGTTT TCANAGCCGT AACAANGGCT TNGGTTCATT 
ACATGAATGT TTCACGTANC ACTTTTCCTT TGAGTANATC TTCAAANATT 
AATTNGAGCT CATCTTTTGC TTCTTTGCCA CTTCAGTTTC ATAAAAACAT 
TAANAGATTA NAATCCTCTG TTCCACCATC AGCTTCAGCT TCAGCTTCAC 
CGGCGTTNCC TATTGATGTT GAGTATCTCC GGCNANAGTT CTCCGGCCAT 
GGANCCACTT TCAAANATAT NGGNAAATAT TTCTCTAGTT NCAGNCTTTT 
NAAATNAAAC NAGTTTTAAA AAAAAAGCT
```
3 prime edge [+] show sequence
1. Chromosome: 1; Position: 20674723 [Map]; Strand: w
  - AT1G55365.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
    Distance: -360; Region: promoter
  - AT1G55370.1 - [+] show detail - NDH-dependent cyclic electron flow 5
    Distance: -60; Region: promoter
  - AT1G55370.2 - [+] show detail - NDH-dependent cyclic electron flow 5
    Distance: -60; Region: promoter
Flanking Genome Sequence: 12-2556-1 - 3-prime edge
```
TCTTCAAACA ACCATTTGAT ATTTCAGTGG CTCCATCTCT CTTCAGTGAC 
AAGTAATGGT TTGGGCCTTT ATTATAGGAC ACAAACTTTA AACTTATACA 
CCCAAAATCT AGTTCCTGTC CAAAGATTTT AACTTTGGGC TTTAGAAGTG 
TAAGTTCAAA AGTGGGTTTT GTTTTTTAAG CCCAAGGTTC CAACTTCCAA 
CTTTCGAATG AAACACCCTT AAAAGTTCCA AACTGATCCC AGTGAACAGT 
GGTTGTGCAA AAAACAAAAA AACGGTCAAC TTGCAAAAAC AACAACAAAG 
TCTTTACCAA ACGCACGAAA CGGTTCCGAG AAGAAGTCAA AATCGTAACC 
AACCAAAGAA AAAAACCCAT CGCCGAATT
```

AT1G55365.1

Model type: Protein coding
Computational Description: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13500.1); Has 29 Blast hits to 29 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55370.1

Model type: Protein coding
Short Description: NDH-dependent cyclic electron flow 5
Computational Description: NDH-dependent cyclic electron flow 5 (NDF5); FUNCTIONS IN: carbohydrate binding, catalytic activity; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 1 (TAIR:AT1G64770.2); Has 58 Blast hits to 57 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 58; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55370.2

Model type: Protein coding
Short Description: NDH-dependent cyclic electron flow 5
Computational Description: NDH-dependent cyclic electron flow 5 (NDF5); FUNCTIONS IN: carbohydrate binding, catalytic activity; INVOLVED IN: positive regulation of gene expression, photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase-type carbohydrate-binding (InterPro:IPR011013); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 1 (TAIR:AT1G64770.1); Has 166 Blast hits to 165 proteins in 21 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link: InterPro Scan - TAIR