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12-2610-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 36987 [Map]; Strand: w
      • AT4G00100.1 - [+] show detail - ribosomal protein S13A
        Distance: -97; Region: promoter
    Flanking Genome Sequence: 12-2610-1 - 5-prime edge
    CATACATATG GTAATTTGGT AAATAATACA AAAAGAATCT ACACAACCAA 
    GTGAAAAATC AAAAATGTGT CTGGTCGTGG ACTCCGATGG GCTTTTTGAG
    GCAAATTGAA AACTGGGCCA GAAATATGAA AGGCCCACGT AAGTCCCGAA
    TATAACCTAA AAAGCACACT CTCTAATAAC AGCCAGAATT AGGGTTTCTC
    TTTGTCTTCA GCAGTCAGTG CGCATCCGTA GGAGAAAAGT GTGAGAATCT
    GCCACCATGG GTCGTATGCA CAGTCGAGGG TTTGTTCTTC TTCTTCGTCT
    TCTTCGTATT ATAGTTACGT CAATTGTGAA ATCTAACATA TCGCTATCAT
    TTATGTAGAA AGGGTATTTC AGCCTCTGCG TTGCCTTACA AGAGATCGTC
    TCCAAGCTGG CTCANGACCA CCTCTCAGGA TGTAAGTTGA TATCATCTCT
    ACTTTTTTGC TCTGCTTTGT TGAATGAATC ATGCCTTCAC ATTATTATTA
    TTACATTTGA CAGGTTGATG AATCAATCTG CAAATTTGCC AAAAAGGGAT
    TGACCCCTTC CCAGATTGGT GTGATTCTCC GTGACTCTCA CGGTATCCCT
    CAGGTCAAGA GTGTTACTGG AAGCAAGATC TTGAGGATAC TCAAAGCTCA
    TGGTGTGTTT TTAATTTCCC AATCTTTCGT TCTGCATTTG TCATTTTGGC
    TTATGATGTT AATGTCATAT TCATACACTT GCAAGGCCTT GCTCCT
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 36871 [Map]; Strand: w
      • AT4G00090.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: 0; Region: exon10 (3UTR)
      • AT4G00100.1 - [+] show detail - ribosomal protein S13A
        Distance: -213; Region: promoter
    Flanking Genome Sequence: 12-2610-1 - 3-prime edge
    TATGTATGTA GTACTATCAT TTTTCTGATA CAAAGAAAAC AAAATGCGTA 
    TAATAATTTT AATCGATTCA TATTTCTTAG TGTTGTTGTG TGCTTTTTAA
    ATTTCCTTAA TTTGGAAAAC ATAGAAGACT TGTGAGTGTT GTACTAGTCC
    TATGAGCAAA ATTCAAAACT TCAGAAGTTA AAAGACACTT GGTAACAAGA
    AGGACTTTAA ACCACCCTTC ATTTGATCCC AACTTGGGAC TCGAAACAAA
    ACCTATTAGA GTTTTTTTCC TCGCAAGTTG TACCGTTTAA ATACGCCTCA
    TGTCATCAAG GGACTACGTG TATGCGAGAG CCTACAAAGA TTGCGACTTT
    GGAGCTTCCC ACAGCTTCAC TTTCTTGTCA TCGCCTGATG TCCCCAAAAC
    CATGGCATGT CTTTCCCCTG AGAACCAACA ACACCACATG AGATTCAGAT
    CACATACAAC TTTACATACA AGAAAGAATT AGACAGGCAC ATACCAACTG
    TAATAGCCTT GGGTGCCCAA GATATGCATG TGATATCCCC TGCACATACA
    ACCAACCGTG GTAAATTTAC TATCACTTGT TTGAATAGTT TTGAGGTATA
    TGTTAAGGTT TTGAATAGGT TGCAAAGAGA AATGTTGAGA GCTATCTATC
    ACCTTCGTGG GCTTTCTCAG CTGTGTCCAA GACATTTCCA GTTTCAGCAC
    ATAACCACTG CAATGTGGAA CCATGGCTTG CTGCCAATAT CTTTCCCTCT
    GGGGCATAAG CTGAGA

AT4G00090.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00100.1

Model type
Protein coding
Short Description
ribosomal protein S13A
Curator Summary
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational Description
ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Link
InterPro Scan - TAIR