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12-2673-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22540948 [Map]; Strand: c
      • AT1G61140.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / zinc fi...
        Distance: -98; Region: promoter
      • AT1G61140.3 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / zinc fi...
        Distance: -98; Region: promoter
      • AT1G61140.2 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein / zinc fi...
        Distance: -338; Region: promoter
    Flanking Genome Sequence: 12-2673-1 - 3-prime edge 
    CTGCCTTGCT CTCTCTTTTG NCTTGCTCCG ANTNGGAAAA AGTAAACACC 
    ACATGGCTAT GGGACTTCCG GCTTTAAATA AGGAACCGGT CGAACATTTG 
    TTTTTCTTTT TCTTTCATTT TTTTCCATTT TTTCATTATT TAATAATGCA 
    TGGTTATATA TAATTATATT TTATGCGCCG TNTTNTTTAT TGTTAAAGCA 
    AAATCACAAT TTAAACAAAA GGAAACAACT TTAATTAGTA GTAGGAAACT 
    GAAGTGTTTA AGTAATGGAG ATTTTTTTGA AGTGTTTGCT AATCATAATT 
    TATTGTAAAA ATTATTTTTA ATTGTGTGAA AATTANATTT TCTACACTAA 
    CAAAAAAATT TCATATGTTA AAGAAAACAA ATATGAAACT AAATCACAAA 
    GATCAATTGG AATGAGACAT GTGGATCGAC TCATTAGAAA AATAATCATC 
    TCAATCAATA AGAAGAGATA AAACATATAT TTGACTAAAT GATCTTACCA 
    ATCTTGTGGT CATAAAATTC TACAAAGCAC TATATTGCTA ATTTCTACAA 
    AGCACACTTG TAATCTTCTG AATCATTTGG TTGGCCCTAA AAGAAGACTA 
    GTATTNTACG AGATCCCCAT TTTTATGATT GATCAATTAT CTTGNAGAGC 
    GCAAAACTTT GTAGGTAGTT CGATGAGAAA NAGCCTTGCT TATTNTGTGA 
    TCAACAATTT CCGTTNTTGC CATGTNTCAA AGTNGTTNGN TTGCCATATT 
    AATTGAAATG AANAGCCTAN GANT

AT1G61140.1

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Computational Description
embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, nucleic acid binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61140.2

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Computational Description
embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61140.3

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
Computational Description
embryo sac development arrest 16 (EDA16); FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; INVOLVED IN: embryo sac development; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (TAIR:AT1G11100.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR