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12-2708-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 173910 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -361; Region: promoter
    Flanking Genome Sequence: 12-2708-1 - 3-prime edge 
    GAAGGCATTA TCTCTCGCTC TCTCATCTCT CCTAATATCT TCATTGCTTT 
    CTCTGGACTC CCTGCTGAGA TATAAACATC CAGCAGCGCA GTATAAGCAG 
    CTAAACCCTT TTGATCATCC GGAAGTAAGT CGAAAACCTC TGCAGCTAAA 
    CGAGGTCTTC TCCCAAACCC GAGCCTGTGG ATCAACATTG CTCCTTGGTA 
    ACAACCAAGC GAGTGTTGGG CTTTCAGCAG CTCCTTGACC ACTTCAATCA 
    CTTTAGGAAG CTCGTTTGAT CTCAGAAAAT TACCAATTAA CGCGAGATAC 
    GCTGACTTCT CGAGATGAAT T

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 174026 [Map]; Strand: w
      • AT2G01390.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
      • AT2G01400.1 - [+] show detail - unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; B...
        Distance: -245; Region: promoter
    Flanking Genome Sequence: 12-2708-1 - 5-prime edge 
    ATGCCTTCGC TGGGGACATA CAATGTTCTA TTGTCTGGTC TTGAGAAAAC 
    CAGTGATTTC CAGAGAGAAA CATCGTCATT GAGGAAGGAG AAAAAGAGTC 
    TTGTTGCTTC TACACGTTTC CGGGAAATTG TTCATGTTGA AGACAAAATA 
    TGTGATCTTC TGTTTGCTAC AAATCTGTTG TAATCTGGTT GCAGGTGAAA 
    GTCAACATGT ACATGTTTAA TCTAGGCCCA TTAAATATGA GGCCTATACT 
    GTTTTTAAGC CCATTACTCA TCATTTTTTA TTATTATATT TAATTTAATT 
    TCTTCATTTT ATTGACATTT CTGATAGATT AGCGGTTGCT ACTGACGCCG 
    GAGAAGAGAG ATGGCGAGAT CGTGCTCTAT CTGGACACCT GTTTTGATCT 
    CACTTTCACC TGTGACCGGA GAATCACCTA AAATTTCACG GCGCCGGGTG 
    ATTTTAGCCA CAAGTATAGG ATCTCCTCAG GTTCGTACAA GTACAACAGC 
    TTTCGAAGAT CCATATAGTT AGTTTTCTTT TCGTGGAGAA ATATGTTGTG 
    CTATGTGTGT CAATGAATT

AT2G01390.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT2G01360.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01400.1

Model type
Protein coding
Computational Description
unknown protein; Has 19 Blast hits to 19 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR