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Mutant Lines
12-2754-1

12-2754-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 295441 [Map]; Strand: w
- AT3G01820.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT3G01830.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -613; Region: promoter
- AT3G01830.2 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -613; Region: promoter

ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCG 
TTCAAACCCC TCTCTTTAAG CTCTCTCTCT TTCTGTGGCT ATTCTCTTTC 
TCTCTTTCTC TCTGAATCCG CCGCCACGCC TTCACCATGG CCTGGCTTAG 
CCGCGTGAGA GGAGTTTCGC CGGTGACAAG GCTCGCAGCG ATTCGTCGAT 
CTTTTGGATC AGCGGCCGCG TTGGAGTTTG ACTACGACTC CGATGACGAG 
TACTTGTACG GAGATGATCG CCGCCTCGCG GAACCGAGGC TTGGGTTGGA 
TGGATCGGGG CCGGATAGAG GAGTGCAGTG GGTGCTCATG GGAGCCCCTG 
GAGCATGGAG GCACGTCTTC GCCGAGAGAC TCTCCAAACT GCTTGAAGTT 
CCTCACATTT CCATGGGGTC CCTTGTCCGT CAAGAACTTA ACCCTAGATC 
TTCTCTCTAC AAGGAGGTGC TACTCTTGTC TTCTCTCTAA ATTTGAATTG 
ATTCGCTTTC TCTTTTACCT TCTTCTTTTA AAAAGCCATC TTTTGCTTTT 
CTTCTTTCGT TGAAAATGTT CACCTTTTTA TGTTGTTACT CGTTCGTGTT 
GATTATTTTG ATTCATAAGA TGTTTGATTA GTGATTATNG NCTANATTAT 
GATCACCTAA TGNGAATNAC CANCCCGGGC CGNNNANCAC NCGNGCNNCN 
NAA

5 prime edge [+] show sequence

Chromosome: 3; Position: 295445 [Map]; Strand: w
- AT3G01820.1 - [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
  Distance: 0; Region: exon1 (5UTR)
- AT3G01830.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -609; Region: promoter
- AT3G01830.2 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -609; Region: promoter

CTTGAAAAAC TAACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTNCATNCC NNCAGNNGGN CGAGNCNTAT NGAACAGNCC 
GACANGTGTC TNTTGANNTT TCTNTCTNNN TTANGTTGAN CGACCNTCCT 
TTACTCANGA ATCCACTGAA ATTGCCACTG CCCACATGTC CGCTTCCTAT 
TTGTCGCTCA GATAAGTTGA GTGAGAATTG AATGGACAAC ACTGAAACAC 
GTTTAATAAG GCCCAAACGT CTCTTAGCCC AGACTAGGCC CACCTAATTA 
TATTNAACNG ACCGAAATTG TCAACCATTG NTAACCACCC AAAGAAATAA 
ATAAAAAAGT AAAGATNCTT ATTCACATGA AGCCTGACAA GTNTGTTTNN 
ATAGAAAGAC TAGNTCAACG NNNNACGGAA ACNNTNCNCG NACNTANAAN 
ANNNTANNAA NCNAAANAAC GAGTGAACCT AAACNGGGAG NNCNNAANAC 
ANTCNGGAAG NNGGANGNNN NGCNCAGATA NTNANANCNC NGGAAACNAA 
NNNGTNNAGT TCTNCNANAA GNGAGNNNGN GAGGACNAAN CANNGAANNC 
GCCACAANCN ANAANGNNNG NAAAANNCAG NNAACCACAN ANGGACANGN 
NNNANGAAAA NGCGTGNNGN AATTANNNGG NNCGNAANAA NNNANNNANA 
CATNTGANCA GNANACNCNG ANTNTAGANG ANNNTCNGAT GAGATGANTN 
NCANNANNAC NACGGGGNNA GNGNGNCGNC TGAGGNGNAN GNNNGACACC 
AANATNNANA NCNNCGNCNN CNNCCATANC AGNNNNNNGT CANGNANCNA 
NGN

AT3G01820.1

Model type: Protein coding
Short Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description: P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, ATP binding; INVOLVED IN: nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Adenylate kinase (InterPro:IPR000850); BEST Arabidopsis thaliana protein match is: adenosine kinase (TAIR:AT2G37250.1); Has 9469 Blast hits to 9393 proteins in 2915 species: Archae - 95; Bacteria - 5951; Metazoa - 891; Fungi - 419; Plants - 430; Viruses - 0; Other Eukaryotes - 1683 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01830.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: calmodulin-like 38 (TAIR:AT1G76650.3); Has 5650 Blast hits to 5606 proteins in 833 species: Archae - 0; Bacteria - 6; Metazoa - 2238; Fungi - 938; Plants - 1778; Viruses - 0; Other Eukaryotes - 690 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G01830.2

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: EF-hand-like domain (InterPro:IPR011992); BEST Arabidopsis thaliana protein match is: calmodulin like 37 (TAIR:AT5G42380.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR