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12-2880-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30389189 [Map]; Strand: c
      • AT1G80860.1 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: exon1 (CDS)
      • AT1G80860.2 - [+] show detail - phospholipid N-methyltransferase
        Distance: 0; Region: exon1 (CDS)
      • AT1G80865.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bac...
        Distance: -349; Region: promoter
    Flanking Genome Sequence: 12-2880-1 - 5-prime edge 
    GTTCTGTTGC CATTTCCGTT CTACTGGTGG CTGTGGACGA ATCCTCAGTC 
    ATGGGTCAAT CTCTGCGGCC GAGAAAGAGA CCCATCGACG GTAATGGCAC 
    GTGTTTCTCA CGTGCTCAAG GCTGCTCAAC TCCTTTCTCT CTTCTCCGTT 
    GCTTCTCTCT CCTGGCCGTC TCCGCTCTAC TTCTGGCCTC TCATGGCCTT 
    TGGCCAGTTT CTCAACTTCA GGTCCAATCT TTTTGTTTCC GTTCCTCTCT 
    CAATTTGTTG AATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30389305 [Map]; Strand: c
      • AT1G80860.1 - [+] show detail - phospholipid N-methyltransferase
        Distance: -3; Region: promoter
      • AT1G80860.2 - [+] show detail - phospholipid N-methyltransferase
        Distance: -3; Region: promoter
      • AT1G80865.1 - [+] show detail - unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bac...
        Distance: -233; Region: promoter
    Flanking Genome Sequence: 12-2880-1 - 3-prime edge 
    AACAGAACTC CGATCGCGGC CAATAATCCC ATTTCGCTTT CTTTTTTTCT 
    TGCTCTGTTT TTGCTGATTT TCCCAAGAAA AACTGTCTCA CTCAAACGAC 
    TTTTATTGGG TCTTTAAATG GGCCTCAATA GATTTGTTTG GCCCAAGGGT 
    ATCTAAATAG CCATCAACAG ATTTATTTGG CCCAAGGGTC TCTAAATAGG 
    CCTCAACATA TTTCTTTTGC CCAATACAAT CATATGCTAC ACATCTTCAA 
    ATCAAACTAA AAGTAAGTTT TAATTGCTTT TTCTTTTTTC TTTTTTTTTN 
    GNATNNANGG GCTACNCCAA CANATNTTTT TTNGNATNAN GNAGGGGGTT 
    NACAANNATC GNNTAAANAA ANNTNTNGNA TNTNTAAAAA NNAACTNTNC 
    CTAAGNGTNN GCTAANAATA CNTCGCNCGG ATNAAATTTT NAAGGGATNT 
    TTTANTTTTA NTTCCGNTTA AGCTTNAGCT TTNGNTGCNG CTTTAAANTN 
    ACCANCCNGG GCCGNNAACC ACCCGGGCCC NTNAAA

AT1G80860.1

Model type
Protein coding
Short Description
phospholipid N-methyltransferase
Curator Summary
Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.
Computational Description
phospholipid N-methyltransferase (PLMT); CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80860.2

Model type
Protein coding
Short Description
phospholipid N-methyltransferase
Curator Summary
Encodes a single-copy phospholipid N-methyltransferase, involved in phosphatidylcholine biosynthesis. Has specific activity towards phosphatidylmonomethylethanolamine and phosphatidyldimethylethanolamine, but not phosphatidylethanolamine.
Computational Description
phospholipid N-methyltransferase (PLMT); CONTAINS InterPro DOMAIN/s: Phospholipid methyltransferase (InterPro:IPR007318); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G80865.1

Model type
Protein coding
Computational Description
unknown protein; Has 3 Blast hits to 3 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR