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12-2892-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2945406 [Map]; Strand: c
      • AT1G09140.1 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: exon3 (CDS)
      • AT1G09140.2 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: exon3 (CDS)
      • AT1G09150.1 - [+] show detail - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containi...
        Distance: -823; Region: promoter
    Flanking Genome Sequence: 12-2892-1 - 5-prime edge
    ATAGTTTGTT ATTGGTGGCA GTTTGAAGAT CCTCGTGATG CAGACGATGC 
    AATTTATGGA CGTGATGGTT ATGATTTTGA TGGGTGTCGA CTTCGGGTTA
    GTAAACGCAT GATGAAAGCT AGCNTTAATT TTCTGTAATT TCTTGTAAAG
    GTGTTATCTT TGTGTGATGT TTTTAGGTTG AGATTGCACA TGGTGGTCGT
    AGATTTTCAC CATCAGTTGA TAGGTACAGC AGCAGCTACA GTGCGAGCCG
    TGCACCTTCA AGACGCTCTG ACTACCGCGG TTTGTAGAGT CTTCTCGATT
    GTGTTATTTG GTGTTGTGTA AAATTTTATA TTTGAAAACT CATTTTTACT
    ACCTAAACAT GTAGTGCTTG TGACCGGATT ACCGCCTTCT GCTTCGTGGC
    AGGACCTTAA GGTAAGGGAC ACTATATAGT CTTTTTCTCT GAATGTTGGT
    TCTCTATATC ATGTNTTGGA TTTATCTCTT TTCTGAAATG ATGTTATTTG
    CTATTTACNG GTGATTAGGA TCACATGCGC NAAGCTGGAG ANGTCTGCTT
    CTCTGAAGTN TTCCCCTGAC CGNAAGGGAG NNNGACATTC NATNNNNNGG
    ATNANCTNCC NNNCNGGGCN GNNNCNACNC NTNCCCCCCC CNNNNNANNC
    NNNNNNNNNG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 2945522 [Map]; Strand: c
      • AT1G09140.1 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: intron2 (CDS)
      • AT1G09140.2 - [+] show detail - SERINE-ARGININE PROTEIN 30
        Distance: 0; Region: intron2 (CDS)
      • AT1G09150.1 - [+] show detail - pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containi...
        Distance: -707; Region: promoter
    Flanking Genome Sequence: 12-2892-1 - 3-prime edge
    CAAACTATCT TAGTCATTAG CCTATACTAT TACAAGAAGA AGAAAAAAAC 
    AAATTTGTAC TTGATCAATA TACCTCGACA AAGGCATAAC CAGGAGGTCT
    CGGTGGAATC TTCAAATCAA TGTCCACAAT TGGTCCATAC NTGAAACAAA
    TATACATAAG AGTCGATTTA AATTGTCTCA GCAAGACAGA ATTGCAAATT
    TATGAACCCA AACAAGTCAT AATGAATT

AT1G09140.1

Model type
Protein coding
Short Description
SERINE-ARGININE PROTEIN 30
Curator Summary
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.
Computational Description
SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 10547 Blast hits to 8837 proteins in 431 species: Archae - 0; Bacteria - 274; Metazoa - 6368; Fungi - 1180; Plants - 1529; Viruses - 86; Other Eukaryotes - 1110 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09140.2

Model type
Protein coding
Short Description
SERINE-ARGININE PROTEIN 30
Curator Summary
Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed.
Computational Description
SERINE-ARGININE PROTEIN 30 (ATSRP30); CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT1G02840.3); Has 23 Blast hits to 23 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G09150.1

Model type
Protein coding
Short Description
pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein
Computational Description
pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; FUNCTIONS IN: RNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase/archaeosine transglycosylase-like (InterPro:IPR015947), Pseudouridine synthase/archaeosine transglycosylase (InterPro:IPR002478), Translation-associated RNA-binding, predicted (InterPro:IPR016437), Uncharacterised domain 2 (InterPro:IPR004521); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor SUI1 family protein (TAIR:AT1G71350.1); Has 885 Blast hits to 883 proteins in 291 species: Archae - 148; Bacteria - 0; Metazoa - 325; Fungi - 155; Plants - 86; Viruses - 0; Other Eukaryotes - 171 (source: NCBI BLink).
Link
InterPro Scan - TAIR