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12-2915-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17948763 [Map]; Strand: w
      • AT4G38310.1 - [+] show detail - Galactosyl transferase GMA12/MNN10 family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G38320.1 - [+] show detail - heptahelical protein 5
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-2915-1 - 5-prime edge 
    CTCCGATGTT TCAAAAACAA AGTCGATTAC GCTAGAATCC ATGGTCACGA 
    CATCTTCTAC AGCAATTCTC TTCTTCATCC GAAGATGAAT T

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 17948647 [Map]; Strand: w
      • AT4G38310.1 - [+] show detail - Galactosyl transferase GMA12/MNN10 family protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G38320.1 - [+] show detail - heptahelical protein 5
        Distance: -45; Region: promoter
    Flanking Genome Sequence: 12-2915-1 - 3-prime edge 
    CATCGGAGGA GTAACAAATG GTCTCCGATT GGGTTTTTAC ACGGCGAGGA 
    TTGTGAACCG GTTACCATTA AGATCCGGTT TTCTGAACCG GGTTTGAATG 
    AAGGGTGTGA TTTAAACCAT TCGTGCCGTT TCTCGTCCCA GTTTGTGATT 
    GATTTCTCGA TCGAGTAGCT TAGATCCGGA TCGTCGTAAA AACCGGGCTC 
    GGGAGGGTCT AATTGCATGT TTAAACCGGA ACATTGAACC GATTCGCAGC 
    CGTGACGTAA ACCGGTGAAG GTGAAAGTGA AAGAAGGTGA AAAGATAGAG 
    AAGTAAGACC AGACGAGGGT AAGAGACATG AAAGCTCCGG CGAGAAAGAT 
    AACACCATCT GATAAACAAA CGGTGGTTCT AGTCTTTGAC CCGCCGTGTT 
    TTCCCATCGG AGATGATGTC ATGTGACTGA GAATCTACAA TGCAGTGATT 
    AGAGATGATG AGAAATTTCA GTAAAACTCT GAGAACAGTT GGGTGATGAA 
    GTAAAAATGT GAGTCAACTA AATGTATGGT AAGATAAAGG GATTATTATA 
    ATTCTGACAC AGATTTAACA TAGTTTTTAG TTTTTCTCCT AATATAAAAT 
    TGATATTACT ATCGAAACAT TTATGGCAAG TGTTAAGACT TTGAACTTTG 
    AAGTCAGGTT ATTAATGCNC ACNANTTATG TNTAGAATAT AATCGTTTGA 
    NAATTTCCCC TATTAAAGTT CTCTNTANCT ANT

AT4G38310.1

Model type
Protein coding
Short Description
Galactosyl transferase GMA12/MNN10 family protein
Computational Description
Galactosyl transferase GMA12/MNN10 family protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: Galactosyl transferase GMA12/MNN10 family protein (TAIR:AT4G37690.1); Has 254 Blast hits to 254 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 254; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G38320.1

Model type
Protein coding
Short Description
heptahelical protein 5
Curator Summary
heptahelical transmembrane protein HHP5
Computational Description
heptahelical protein 5 (HHP5); FUNCTIONS IN: receptor activity; INVOLVED IN: response to hormone stimulus, response to sucrose stimulus; LOCATED IN: integral to membrane; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Hly-III related (InterPro:IPR004254); BEST Arabidopsis thaliana protein match is: heptahelical protein 4 (TAIR:AT4G37680.2); Has 2557 Blast hits to 2136 proteins in 523 species: Archae - 0; Bacteria - 635; Metazoa - 1083; Fungi - 463; Plants - 198; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink).
Link
InterPro Scan - TAIR