1. Home
  2. Mutant Lines
  3. 12-2919-1

12-2919-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30039172 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon5 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-2919-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    GCGAACCTAT GTGGCTCCGC AGCGTTGAGA CTGGCCGTGA GATTCTCAAC 
    TACGATGAGT ACCTCAAGGA GTTTCCCCAA GCGCAAGCCT CTTCGTTTCC 
    TGGAAGGAAA ACCATCGAAG CATCTAGAGA TGCNGGGAAT TGTGTTTATG 
    GACGCACATA AACTTGCCCA GAGTTTCATG GACGTGGTAC TTTTCCATTA 
    TTTATTACTG TTACCAGCTA CTATAACTTA TTCTATGTGT ATAAAAAGGA 
    ATTGATGTGT ACGTGTAACG CGCAGGGACA ATGGAAAGAG ATATTTGCAT 
    GCTTGATCTC AAAGGCTGCA ACGGTCGATG TTATCCGGCA AGGCGAAGGG 
    CCTTCACGGA TCGACGGGGC CATTCAGCTG GTGAGTACTC ATCAATATAT 
    ACATATAGTG ATAATTGATG AATGACGACT CAGCTGATAC ATGGGATGGA 
    TATGGTTTAT AACTACTGTG GCAGATGTTC GGCGAGATGC AGCTGCTCAC 
    TCCGGTCGTC CCCACAAGAG AAGTGTACTT CGTGAGAAGC TGCCGGCAGC 
    TGAGCCCTGA NAAATGGGCA ATAGTGGACG TCTCGGTCTC CGTGGAGGAC 
    AGCAACACGG AGAAGGAGGC TTCTCTACTG AAATGTCGAA AACTNCCCTC 
    CGGTTGCATC ATCGAGGACA CCTCCAACGG TCACTTCAAG GTCACCCTGG 
    GTGGAGCACC TTNACGTGTN TGNTTCAN

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30039173 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon5 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-2919-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG TTCGCCTGAG GTGGCCATCT TCTGGAGTTC 
    AAGGGTGGCT CGGTTAGAAA TCTCGGCGAT ACGGGACTTC TCGAGGGCAA 
    AGACGCCCGT GTAGAAATCG AGAGAGCCGA GACGGTGTTC TTGATCGTCG 
    GAGCATGAAG CCTGCAGGGG ATAGGGAGTG CGTCCGAGAG CTGCACGAAG 
    CT

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR