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12-2953-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 10918980 [Map]; Strand: c
      • AT4G20210.1 - [+] show detail - Terpenoid cyclases/Protein prenyltransferases superfamily protein
        Distance: -698; Region: promoter
      • AT4G20220.1 - [+] show detail - Reverse transcriptase (RNA-dependent DNA polymerase)
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-2953-1 - 3-prime edge 
    TTTCTGAGTA AATTGGGTAA GGAACTTTTG GAGACGGTTT TAAAACGGCA 
    CTTGAAGTTC AAAATTATAT ATATCAAAAA TTCTCACACA AGGTAACAAA 
    ATTATGTCAA TGCCAACAAT GGAGGTGATG CNTGAGAGCA CATCGAGCGA 
    GTAAACCAGT AAAGTTATGT ATACAATAAA ATTTAGAAAA TAAAAATATA 
    TAAATTCTCA AAAGAGATC

AT4G20210.1

Model type
Protein coding
Short Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Computational Description
Terpenoid cyclases/Protein prenyltransferases superfamily protein; FUNCTIONS IN: lyase activity, magnesium ion binding; INVOLVED IN: metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Terpene synthase, metal-binding domain (InterPro:IPR005630), Terpenoid synthase (InterPro:IPR008949), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Terpene synthase-like (InterPro:IPR001906); BEST Arabidopsis thaliana protein match is: Terpenoid cyclases/Protein prenyltransferases superfamily protein (TAIR:AT4G20200.1); Has 1635 Blast hits to 1609 proteins in 176 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1631; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G20220.1

Model type
Protein coding
Short Description
Reverse transcriptase (RNA-dependent DNA polymerase)
Computational Description
Reverse transcriptase (RNA-dependent DNA polymerase); CONTAINS InterPro DOMAIN/s: Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103); Has 55 Blast hits to 55 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 55; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR