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12-2968-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23200811 [Map]; Strand: c
      • AT3G62710.1 - [+] show detail - Glycosyl hydrolase family protein
        Distance: -176; Region: promoter
      • AT3G62720.1 - [+] show detail - xylosyltransferase 1
        Distance: -306; Region: promoter
      • AT3G62720.2 - [+] show detail - xylosyltransferase 1
        Distance: -345; Region: promoter
    Flanking Genome Sequence: 12-2968-1 - 5-prime edge
    NNAATCACGG GTAATTTTTG TTTTCCGTTA ACAGAAAGCG GTAAGTTGTT 
    AAACAGAAAA CGACTGGCTT GGAGCTCACA CAACTGTCCG GATTAAATTA
    GTTATGTTTC CGTTTTTGTC TGTTGTAAAT TTAGTGCGCC AACCGATTAT
    AGACGCTAGA TATTTTTACC GTTGGAGATT AATTAACGGC CTTTCGTAAG
    TAAAAAAACA AACTGTATAT GATCTGTTCT TGTTTATTTT TCAATTCAGG
    ATTTANAAAN ATCATTATAT CTTTTTAATC AATATTCTGA ATT
  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 23200927 [Map]; Strand: c
      • AT3G62710.1 - [+] show detail - Glycosyl hydrolase family protein
        Distance: -292; Region: promoter
      • AT3G62720.1 - [+] show detail - xylosyltransferase 1
        Distance: -190; Region: promoter
      • AT3G62720.2 - [+] show detail - xylosyltransferase 1
        Distance: -229; Region: promoter
    Flanking Genome Sequence: 12-2968-1 - 3-prime edge
    NTGATTTAGG CCGACATTTT AATTGGGCTT ANATNGTTAT CAACCAAACA 
    AATGGGCTTA GATTATTAAG GCCCAATTTA TATCTGAAGA GTGTTTTACC
    ACTAGTGTTT TTTTCACTAC ACTGATCCGC CGCACCAAGT TTTAACGCNG
    TCCCAGACAG ACAGGCAGGC ATGTTCTGTC TGACATTTCC AAAAATTCAA
    ATATTTTTAT TAAATAAATA TATTTTGTTT ACTTGTTTAA TCCAAATTTA
    AATCTTCATT GAATGCTTTT TCTGAAGCCT TATCTAATAA ATCTCTTCGT
    TGATCCTTAC TTTCCATTAA CGAGGTAGAA ATTCCAAAAC GCGTAATAAT
    CTTGTCGTCA TTACAAATTA CAATAAAAAG AAGACATTTT TATTTAGATT
    TCCCTCTGAT CCTCTCTTTT AGATTTCGAA TCGAGACCAG ATCTGCGTGA
    AGATGATAGA GAAGTGTATA GGAGCGCATC NGTTTNGGAN ATTACAGAGA
    TTCATGCGCC AAGGGAAAGT GACGATTCNT TGGNCTCGTT CTCACCGTCA
    TCGTNCTTAC GTGGCACAAT TCGGAAGCCG GTAAGNTTTG GTACGCCCGG
    AGAAAGATNT CGAAGGAAGA TCCNGGGAAN CATTTTCTTC TACACGCCGT
    AAACGCGGNN AGCCTTAANC GTGTCCTNCG GTAGAAGTTT CNTCCAAAAA
    CGACGTCGTC CAAACAANNG NAGAAANGGN GGCTANCAGT TNCNNGACCT
    CNNACNNCGN CCAAGNNTTT

AT3G62710.1

Model type
Protein coding
Short Description
Glycosyl hydrolase family protein
Computational Description
Glycosyl hydrolase family protein; FUNCTIONS IN: xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 3, N-terminal (InterPro:IPR001764), Glycoside hydrolase, family 3, C-terminal (InterPro:IPR002772), Glycoside hydrolase, catalytic core (InterPro:IPR017853); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase family protein (TAIR:AT5G20950.2); Has 10899 Blast hits to 10226 proteins in 1653 species: Archae - 71; Bacteria - 6941; Metazoa - 14; Fungi - 1479; Plants - 475; Viruses - 0; Other Eukaryotes - 1919 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62720.1

Model type
Protein coding
Short Description
xylosyltransferase 1
Curator Summary
Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.
Computational Description
xylosyltransferase 1 (XT1); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, UDP-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: polysaccharide biosynthetic process, xyloglucan biosynthetic process, root hair elongation; LOCATED IN: mitochondrion, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: UDP-xylosyltransferase 2 (TAIR:AT4G02500.1); Has 441 Blast hits to 440 proteins in 92 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 134; Plants - 286; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G62720.2

Model type
Protein coding
Short Description
xylosyltransferase 1
Curator Summary
Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides.
Computational Description
xylosyltransferase 1 (XT1); FUNCTIONS IN: xyloglucan 6-xylosyltransferase activity, UDP-xylosyltransferase activity, transferase activity, transferring glycosyl groups, transferase activity; INVOLVED IN: polysaccharide biosynthetic process, xyloglucan biosynthetic process, root hair elongation; LOCATED IN: mitochondrion, integral to membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Galactosyl transferase (InterPro:IPR008630); BEST Arabidopsis thaliana protein match is: UDP-xylosyltransferase 2 (TAIR:AT4G02500.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR