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12-2983-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22871011 [Map]; Strand: c
      • AT1G61890.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-2983-1 - 5-prime edge 
    GTGTTAACAG ATCGAGAGTT ACCGTATTTT CGCCGGATTT ATCTAGCGAT 
    GATGATTGAG ATGAAGTTTC TCTTTCATCT GGCGGCTCCG GCGATCTTTG 
    TTTACGTCAT CAACAACGGC ATGTCAATTC TTACACGTAT CTTCGCTGGA 
    CACGTAGGAA GCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22871127 [Map]; Strand: c
      • AT1G61890.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-2983-1 - 3-prime edge 
    GTTAACACAG TCTCGAGACG ATAATCGACG AACGACTTCG ATGATTCGAT 
    TAATGGACGG TGAAGATTTT CTAGCGATTC TGAATT

AT1G61890.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 9516 Blast hits to 9487 proteins in 1915 species: Archae - 228; Bacteria - 6498; Metazoa - 145; Fungi - 328; Plants - 1371; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).
Link
InterPro Scan - TAIR