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12-2990-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 91822 [Map]; Strand: w
      • AT4G00220.1 - [+] show detail - Lateral organ boundaries (LOB) domain family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: 12-2990-1 - 5-prime edge 
    NTTANCAACT CTAGAGCTGC CACAACCTCA ACCACGCACA GGTTCCGGTG 
    TCATCTTCAG GATCTCTACA GGCTCTTTCC ATAACGGACC TCCCAACAAT 
    ATCACCGTCG GTGTACGACC TCTCCTCCAT CTTCGAGCCG GTCATGTCCT 
    CCACTTGGGC CATGCAGCAA CAACCACGAC CGTCTGATCA TCTCTTCGGC 
    GTCCCGTCAT CGTCCAATAT GGGCGGAGGC GGTGAGCTCC AAGCACTGGC 
    GCGTGAGTTT ATTCACGGTG GGCAAATGCC AGCTCAGCCA TCGCCGGGAA 
    CCAGTGGTTC TGCCTCGTCA GTGATAAAAC GAGAATGAAG TTATTTTTAT 
    CGTATGTTTG TTTATTTGGA CCGTAAGAGA TCTATAGTTA GCCATATGTT 
    TCTCCTTGTA ATATATATAC TTGGTCGAAT T

AT4G00220.1

Model type
Protein coding
Short Description
Lateral organ boundaries (LOB) domain family protein
Curator Summary
Encodes a protein containing a LOB domain that is expressed in embryos, flower primordium and lateral floral organ boundaries. Overexpression is correlated with activation of STM and KNAT1 and down regulation of PIN1 and reduced auxin transport levels. Ectopic expression in plants results in premature termination of the shoot apical meristem and small, lobed leaves.
Computational Description
JAGGED LATERAL ORGANS (JLO); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 18 (TAIR:AT2G45420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR