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12-3023-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14277051 [Map]; Strand: c
      • AT4G28940.1 - [+] show detail - Phosphorylase superfamily protein
        Distance: 0; Region: exon5 (3UTR)
      • AT4G28950.1 - [+] show detail - RHO-related protein from plants 9
        Distance: -943; Region: promoter
    Flanking Genome Sequence: 12-3023-1 - 5-prime edge 
    CNTGATAAAC TAACAAAATC GGTTATACNC ATGACTGGCN TACNCGGTAC 
    CANNTCATNC TACTGANGTN NNTGTTTAAC ATTGAAGTAC NGTACGTCAT 
    TATTTGGTTT AGACACATAT CTAATCGTGT CACACACATA ATACATCTTA 
    CTTTTCCCGT TACATGCTCT TAATCCACAC TCTTTAGTCT TAATCCACAT 
    TTATCATTCT GATTGAATCT TGCTTTCGTG TGGAGGCAAC AAAGCAACGA 
    ACTTAACGAG AATATCGACG GAGTTTTCTG CGGCGAGGCT GCTGAATATG 
    CTGGCCTCGT TGGAGACGTC GGAGCCGCCG CCAGCGAGAT CGGAGAGGGC 
    ACGGATGACG ATGAAAGGGA GGTTTTGCTG GTGGGAAATG AGAGCCACGG 
    CGGCGCTCTC CATTTCAACG GCGGTGGCGT TAAACTTGGA GTTGAGGAAA 
    GTCCGGTAAG CTGCGTTGTC GATGAAAACA CTTGCACTCA TACCACGTTT 
    AACGATGGTG ACCTTCGGTG GTCGAGGAAG GCATGTGGTG TTAACACACT 
    GCGGTAGCTT CGTGTCCTGT TTTGGTTGGA TGTTTCCACA TTCGAAAGAC 
    ACAATATAAT TGCATTAATT AAACATAAAC CAAATAATTA AACTTTATTT 
    CTTTTCTAAT CGCCTTTGAC TCTAAAAATT GAGCTTTATT TTGATACTGA 
    TCATGAGTAT ATAATATATC AGAAATCTGC CGAGAAAACA AAATATTTGA 
    TCAGCTNTAA GATATATAAG TGTAGNCGTA TAC

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 14277094 [Map]; Strand: c
      • AT4G28940.1 - [+] show detail - Phosphorylase superfamily protein
        Distance: 0; Region: exon5 (3UTR)
      • AT4G28950.1 - [+] show detail - RHO-related protein from plants 9
        Distance: -900; Region: promoter
    Flanking Genome Sequence: 12-3023-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATATA 
    ATATCAGTAG TACTCCTCTC GAATTTTAGA AAGTCGTTGA AAAAGTCTCT 
    GACGAAAATT AGAAAGCGGT TGCAAGAAGA CTTTTAAAAC GTTACATGAG 
    CACAATTCTA AGAAACTGGT TATGATTTTC TAGGAAACCA AAACACCTTT 
    TTGTGTAGGT TCGAGTACTT TATTCTTCTA ATTGTTTTCG TAAAAAGAAT 
    ACTCGAGTTT AAAACCGATA CAAATGTTAC ACTACGAGAC TTAAAATAGT 
    AAAATACAAC TAGTTTTGTT TTCTGAAATA CCACACTTAA GAAGACTTCT 
    TGAAGGCAAT CACCTTCTCA AAATTTCATA ATAGCTTACA AAATCAAGTG 
    TACGAGGGTT TATGGATACT TTATATGACT TTCTGAACCT TCGAAAGCT

AT4G28940.1

Model type
Protein coding
Short Description
Phosphorylase superfamily protein
Computational Description
Phosphorylase superfamily protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: nucleoside metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis; CONTAINS InterPro DOMAIN/s: Nucleoside phosphorylase (InterPro:IPR000845), Nucleoside phosphorylase, family 1 (InterPro:IPR018017); BEST Arabidopsis thaliana protein match is: Phosphorylase superfamily protein (TAIR:AT4G24340.1); Has 4063 Blast hits to 3116 proteins in 1287 species: Archae - 0; Bacteria - 3887; Metazoa - 0; Fungi - 0; Plants - 125; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28950.1

Model type
Protein coding
Short Description
RHO-related protein from plants 9
Curator Summary
A member of ROP GTPase gene family.
Computational Description
RHO-related protein from plants 9 (ROP9); FUNCTIONS IN: GTP binding; INVOLVED IN: protein transport, small GTPase mediated signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Ras (InterPro:IPR013753), Ras small GTPase, Rab type (InterPro:IPR003579), Ras small GTPase, Ras type (InterPro:IPR003577), Small GTPase, Rho type (InterPro:IPR003578); BEST Arabidopsis thaliana protein match is: RHO-related protein from plants 10 (TAIR:AT3G48040.1); Has 24641 Blast hits to 24616 proteins in 674 species: Archae - 9; Bacteria - 56; Metazoa - 12738; Fungi - 3855; Plants - 2680; Viruses - 20; Other Eukaryotes - 5283 (source: NCBI BLink).
Link
InterPro Scan - TAIR