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12-3029-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19544434 [Map]; Strand: w
      • AT2G47670.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3029-1 - 3-prime edge 
    NTGCTGTAGC NCNTGCTNCA ANNCNACGTN AACTGCCACG GTCGAATCGN 
    AGAGNAGAAT CGCTNGAGAG CNGANNGGAN CNANCACTAT NANGNGTTTC 
    TGGGGNNCCA TTCNTNGNTT TNNGNNAGTT CTATCNGATC TGGACTCGAT 
    ATGATGGATC ACCGGCCCAT GNCCGGATCN CCACCNCGTG GCTNATCGCA 
    GCACTCACGG ATGATGACAC CGTGTCTAGA TGGATTTGAA GAGACGTCGA 
    GTAGAACACG GACGGTCAGG ATGGTCCGGA GGAAGGCCAC CAAGTGTATG 
    CGACTATGCA GCAATGCTCT GGCTCTCCTC AAGAAGCT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19544530 [Map]; Strand: w
      • AT2G47670.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3029-1 - 5-prime edge 
    GCTGNGNCTA GCGAATGACC AGCCNGGGCG GCCGACCAGA CATGCCAAAT 
    NGCAGAGGCG GGTGANNGTN ACCANNGACC ATTGAANCAC TGAANGAAAT 
    TATANGGACN CAGANGCGGG CCGTATCAGG GCCNCGGAGC ACNCAGTGNC 
    TAACGGATGA GCCAGNACTG NGTCACGANG CCGCTTGNGT NGATGTTGNT 
    ACCGGTGGAG GCTAACGACG GATTTGGGTT TAGTGCCACA AGAAGAGAGA 
    GAAGCAGAAG AAGAGTAAAC GTGATAGGAG AAGAAGAAGA CGAAGNCATG 
    TTCTTTATTG GAGGAATCCA AACTTTTTAA NAAATNGGGA CGATATTTCA 
    AATGGAGATC GAGAGAGACT ATATTATATA CACAAGACCA AGAAGGAGCC 
    TATGGGATTA AGNNNCAACC NTTTTAATTA GGGACGGGTA ATTGAAGTNT 
    ATGAGGGGAT TNGGGAGGGN CATTNGANNN NGNANGNNNT GNNGGNCCNC 
    ATNNCAAACG GGNNAAAGCN NNATNNNNNG GGANNNAGCC NNANGGGGGN 
    GNNNNGAANA AACAGNCCNN GGNCNGNNNN NANCNNGACN NCNCGGACAN 
    NANANNNAGG ANANNG

AT2G47670.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT3G62820.1); Has 822 Blast hits to 815 proteins in 45 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 822; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR