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12-3061-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30040872 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon10 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 12-3061-1 - 5-prime edge 
    ANTANATCAC CANNCCGGGC NGTNNGNNCA CGCGAGCGGT ANATGAGGGT 
    TNGGAGGGCG AGTGTCACGG AGCGACCCTC NTTGGCTGTT TCTGTCGTCT 
    TGTGTAGACG TTATTACCAG TGGCCGTGAC TCTACTCCAT CAGGTATGAT 
    TGAGAATCCA GAGGGGAGGA TTTGGATGTT GCTTGGATCA TGTCCCGCGA 
    GCACCAGCTG TGTCGTGTTT ATATCTACGG GAGCGTATAC CACCACCGAC 
    TCATACGAGT TAGTGCTGCT GTCTTGCAGC ACCCATATGC TCTTTTCTCT 
    CGATTTCACT GTCTGGAAAT GTATAGAAAT TCAGATTATC AAGGCCTAGA 
    CAGATTTAGA GGAGGAGAAG ACAAAATAAA CGCACCTGGA TTGCCACTGA 
    GTTGCCTCTG TCTTGTCCCT TGGATAAGTT TGCAATAGAC TGAACATGAG 
    CTCCGTTTGA CAAAGCATCC CACTGATGAT ATGTATCGTT AGATAAATAT 
    ATGAGTGGAA ACCGCTTTTC TTGTTTGCTT AAATGTGTGT GAATTTGACA 
    AGGNACCTCA TGCCGACGAG CTTCATCTCT NAAGAAATCG AAGAGAANAG 
    CTGGANAAAC AGGTAACCAC AGCGAANAAN AAGCGCAGAC AATGACTCCC 
    GNGGCTCGCC AGGATCATGA ANGGTCTTCC TGGGAAAAAC CCCGCATGTC 
    TTGGCCAGNT TTNGGGGGGA ATTTNGGNCC ATTGATGGNA GCTTNNNNGC 
    ANA

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30040987 [Map]; Strand: c
      • AT1G79840.2 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon10 (CDS)
      • AT1G79840.1 - [+] show detail - HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START ...
        Distance: 0; Region: exon9 (CDS)
    Flanking Genome Sequence: 12-3061-1 - 3-prime edge 
    GTCTGTGGAA TCCGTGACAA ACCTCGNCTC AGTCACACTA CACAACATTA 
    AGAGAAGTCT ACAAATCGAA GATTGCTGAT GACAAGTCAC AGCAGATATT 
    ATTTACCTAT ATATAATTAT ATGATAATGT ATAGCAGCAG TGCATTAAAG 
    TTTTGTACAA AAACGACCAG CTCTCTCTTC TCCAATCCTA TTATTATCCA 
    ACACCTTTTT GGTCCATTCC ATTGGCAAAT GAACCATAAC AAGAGGAGCA 
    AGAACCGTAG AATTAGCAGA AACAAAATNC AGGATCACTG AGACCACAAG 
    CACACAGTAG CAACAGAAAC ATAGTNAATT CACATTCTAA ATGNAACTGG 
    AGGTGAAGAT GAAGTAAGGA GCAAACAATN NGGTAGTCGG AAACANTCAG 
    ATNGANGACA CNCGTCATGG NATAGGCAAT GANNTCACNN ANGCNTTCCA 
    TAAANACACT GGTNCCNGGA TACACAACAN ACAAACAGAA GCNGAGNNAA 
    AAAANNACGG GNNTNCCGGA GAACCAAAGA GCNNGANCNN NGCTACNCCC 
    GNCTGCNGNA AACNCCNAGG GGAAGGCCAA GGAAGNNAAN CNCNNTNCNG 
    GCAGCNGNTA NACNNGTCGG NCNTNGCNNA TGNACANGGA ACNGCGCCAA 
    NGNCGATNNA GNNTGANNGG GGGGNNNNGG TGTTTNNNCN NGCAGAACNN 
    CNACGNCCNN CTNCGTNNGA NANNNGGANG GNCNNGGNCC NGGNNNCNNN 
    NNCANNGNNC GNANCNNNCN NNAAGGNANT GGNNGGGGGG GNCN

AT1G79840.1

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein (TAIR:AT4G21750.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79840.2

Model type
Protein coding
Short Description
HD-ZIP IV family of homeobox-leucine zipper protein with lipid-binding START domain
Curator Summary
Glabra 2, a homeodomain protein affects epidermal cell identity including trichomes, root hairs, and seed coat. It also down-regulates seed oil content. Expressed in atrichoblasts and required to suppress root hair development. Also expressed abundantly during early seed development. Directly regulated by WER.
Computational Description
GLABRA 2 (GL2); CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: protodermal factor 2 (TAIR:AT4G04890.1).
Link
InterPro Scan - TAIR