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12-3065-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 104261 [Map]; Strand: c
      • AT2G01170.1 - [+] show detail - bidirectional amino acid transporter 1
        Distance: 0; Region: exon2 (CDS)
      • AT2G01170.2 - [+] show detail - bidirectional amino acid transporter 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-3065-1 - 5-prime edge
    NNTGCACCNC TANCCNAGGN ACAGTNATGG CCATATANNG NCGGGNNAAN 
    CANCNNGNGC AGNCCTANCA NGGCTCNCCT GGNATNANCA CGCACCTTAC
    AACACNGGGN NTTAAGATGA CNGCGGTACC TGACACTCCT GGTCTANGGG
    ATGGTTCCTG GCCGGCTCCT TCACAATGTG TGTTGGGTTA TCGATGGCCG
    AGATCTGCTC CTCTTACCCT ACCTCCGGTG GTCTCTACTA CTGGAGTGCT
    ATGCTCGCTG GCCCTCGTTG GGCTCCTCTT GCCTCTTGGA TGACTGGCTG
    GTACTCCCTT CTCTCACCTT TTTCTTAATT TGGAATTGGA AGCAAGAGAG
    CGTCTCTCTC TGACTCATTT TCACAAATCT TTTTTCAGGN TCAACATCGT
    TGGTCAGGTG CAACATTCAT TCAAGCAGAC TTGTTTTCAT TANATATATC
    TCTCATTGGG GCTAAAAGTA AGGTTGTGGN GTGTTTGCAG AGGGCANAGA
    CNGNCANCGT TNACTTNTNT NTGGCACAGN NGATTCAGGG GATCNTNCTT
    ATTTCCACCN GGGGNAGAAA GGNGGGNGGN NNTAAANGAN NAACNNAGNN
    GAGANAGGNN NCATAGGNGG GANNANCANC NNGGGGNGNN GANNGNNGNN
    NNAANAANNN ANNNNNNGNA NANNNNANNN GANAGNNNNN AANANNNAAA
    NNANNAAAAG AAAANAAAAN AANANAANNA NNNNNANNNA AN
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 7881153 [Map]; Strand: w
      • AT1G22300.1 - [+] show detail - general regulatory factor 10
        Distance: 0; Region: exon1 (5UTR)
      • AT1G22300.3 - [+] show detail - general regulatory factor 10
        Distance: 0; Region: exon1 (5UTR)
      • AT1G22300.2 - [+] show detail - general regulatory factor 10
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: 12-3065-1 - 3-prime edge
    GTTACTACTA ATCTCGAAAT CAATCAAATC AAAGCATCCA TTTTTGATTC 
    AGACTTCAGA GAGACAGAGA AGGAAGAAGA AGAAGAAGAA GAAGAAGAAA
    AAACTATGGA GAATGAGAGG GAAAAGCAGG TTTACTTGGC TAAGCTCTCC
    GAGCAAACCG AAAGATACGA TGGTATTTTC CGATTTCTGG ATCTCTATTC
    AGAAAATGAT TTGTTCATGT TTCTGAAAAA ATCCGATCTT TTATTGCTCC
    GATCGAAATT GTTTTTACAT TTCCATAGAT TTTCTTTGTA GCCCTTTACC
    GATTTGTATG TTTCTGGGCT GTTACTTGAT CTGGACTTTT AGATGCGACC
    TTTAAGTAAT TTCTTGTTTA ATGTTGTTTA NATACTCTGA TCACTCTTGA
    TCTTATCTTG ATATAATTTT ATACTTACTG TTGTCGAATC TCTTAGCATG
    AAAATGAAAT AGATC

AT1G22300.1

Model type
Protein coding
Short Description
general regulatory factor 10
Curator Summary
Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1
Computational Description
general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.2); Has 2709 Blast hits to 2701 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 330; Plants - 762; Viruses - 0; Other Eukaryotes - 359 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22300.2

Model type
Protein coding
Short Description
general regulatory factor 10
Curator Summary
Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.
Computational Description
general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.1); Has 2707 Blast hits to 2699 proteins in 383 species: Archae - 0; Bacteria - 0; Metazoa - 1258; Fungi - 330; Plants - 762; Viruses - 0; Other Eukaryotes - 357 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G22300.3

Model type
Protein coding
Short Description
general regulatory factor 10
Curator Summary
Encodes a 14-3-3 protein. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1.
Computational Description
general regulatory factor 10 (GRF10); FUNCTIONS IN: protein phosphorylated amino acid binding, ATP binding; INVOLVED IN: brassinosteroid mediated signaling pathway; LOCATED IN: mitochondrion, chloroplast stroma, plasma membrane, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: 14-3-3 protein (InterPro:IPR000308); BEST Arabidopsis thaliana protein match is: general regulatory factor 11 (TAIR:AT1G34760.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01170.1

Model type
Protein coding
Short Description
bidirectional amino acid transporter 1
Curator Summary
Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.
Computational Description
bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: amino acid transport, transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 15465 Blast hits to 15422 proteins in 1894 species: Archae - 296; Bacteria - 11987; Metazoa - 438; Fungi - 2169; Plants - 254; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01170.2

Model type
Protein coding
Short Description
bidirectional amino acid transporter 1
Curator Summary
Encodes a bidirectional amino acid transporter that can transport ala, arg, glu and lys but not GABA or pro with both export and import activity. Its expression is localized in the vascular tissues suggesting a function in amino acids export from the phloem into sink tissue.
Computational Description
bidirectional amino acid transporter 1 (BAT1); FUNCTIONS IN: arginine transmembrane transporter activity, L-lysine transmembrane transporter activity, L-alanine transmembrane transporter activity, L-glutamate transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid permease subfamily (InterPro:IPR004756), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR