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12-3110-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30042575 [Map]; Strand: w
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: -623; Region: promoter
      • AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 12-3110-1 - 5-prime edge
    GNCGTAGAAN TGGNNANTGN ATGNNGTGGA GATGAAGATN NGAGAAAAGN 
    CAGGGGTATC TGTTGCTNGA NANTGAGCAA AANGGTCTNA GCATCGCCTC
    TTCGAAGACC TCTCGNATTC TCCANACTTA CTCCGGAGGC CCAGGGTGCC
    GATGATTTGT TGTCTTTATA AACCATTTTG CGTTTCCATA TAATGATTGA
    TGCCTCGATT CTGTTTTTGA GGTCCACGAT CTTGTGCTCC GACGACATGT
    CCATGCTGCT CAGGAACTGG TCCGGGTCAA AGAAGTCCAC CGTTATATTC
    TTGTACATCT GATCCCCGAG ACTCGCCCTC CCGTTCTGTT TATTTATTTA
    TTACAAACTA AACAAGTGAG TATTATTCTT CATCAACTCT TCTAATCAAT
    AACATCAATT GTTGGTGTCT TTTTTTCTTT TTACCTTTGG GAGANAGTCG
    ATGTAGCTCT CAGGTATCTC CATCTCNAAC AAAACCTGTG CGTTTATGGC
    CATGGCTGCC TTTAGAACCT GGNTNACACA ATCTTTCTGG TACTGCAAAA
    ACCTNCTTGA AGCTACCANN CCGGGCNGNN NANNANNNNN GNNNNNNANN
    GNG
  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30042463 [Map]; Strand: w
      • AT1G79850.1 - [+] show detail - ribosomal protein S17
        Distance: -511; Region: promoter
      • AT1G79860.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 12
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: 12-3110-1 - 3-prime edge
    TCAACGAGGA CGTGGGCCAG GCGGTGCTGG AGAGCTACTC GAGAATACTG 
    GAAAGCT

AT1G79850.1

Model type
Protein coding
Short Description
ribosomal protein S17
Curator Summary
nuclear-encoded 30S chloroplast ribosomal protein S17
Computational Description
ribosomal protein S17 (RPS17); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plastid small ribosomal subunit, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Ribosomal protein S17, conserved site (InterPro:IPR019979), Ribosomal protein S17 (InterPro:IPR000266); BEST Arabidopsis thaliana protein match is: Nucleic acid-binding, OB-fold-like protein (TAIR:AT1G49400.1); Has 7449 Blast hits to 7449 proteins in 2625 species: Archae - 136; Bacteria - 5329; Metazoa - 5; Fungi - 63; Plants - 102; Viruses - 0; Other Eukaryotes - 1814 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G79860.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 12
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. Coexpression of AtPRK2a with AtRopGEF12 resulted in isotropic pollen tube growth Growth.
Computational Description
RHO guanyl-nucleotide exchange factor 12 (ROPGEF12); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 305 Blast hits to 303 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 305; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR