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Mutant Lines
12-3158-1

12-3158-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 20345554 [Map]; Strand: w
- AT3G54910.1 - [+] show detail - RNI-like superfamily protein
  Distance: -822; Region: promoter
- AT3G54910.2 - [+] show detail - RNI-like superfamily protein
  Distance: -765; Region: promoter
- AT3G54910.3 - [+] show detail - RNI-like superfamily protein
  Distance: -748; Region: promoter
- AT3G54920.1 - [+] show detail - Pectin lyase-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

ATGATGAGGA GGATGATGAT GATGAGGATG ATGATGGTGA GCTTAGTTGT 
CTTCTTGCAA GAGATTCATT TACACTCCTG TGAATTTCGG AGAAGAAAGT 
TTGAGTTTTT ATTTTATCTG GGAAAATGTG TAATGAGAGA GGGAGGAGCT 
TTTTGTTTAC CTGATGACAT GGAGAGCGAC GGAATCAGGG GAAGGGTGTT 
GGTGAGGGAG AGTGAGATTT AGGGGTTTAG TGGCGGAGAG GAGTGTGAAG 
AAGAGGCAGA GAAGGAAAAT GGTGTTGGAG AAGTTTTGAA GAAGCATCGT 
TAGTGGCGGA TTTTGACTTG GTGTTGCTAG ATTAAGCTGT GGAAGTTGCA 
GTGTGTGTGT TGAGTGTCAG AAGAAGAATG TTGGTAGAGA AATGTGAAGA 
GAGAGTAGCA NAGAAGGATT TGAAATCCAC ATAAGGGAGA AGAGGAGGAG 
AANAANAANA AGCTGCTTTC TCTCTCACAC TCTCTCTCTC TCTCTGCTTC 
TCTGCCCTCT TGCTGGAAAC AGGGCTAATA NGTTNTCTNG ANATTNTGAT 
TCTGTNTCTC TTGGGGATTT GNGTCCACTN GCNTTCTGGA GGANATNGGN 
NNACTATNTG GGTCTNANAT TNTGGNNNCN NCTCNTNTTT TATNTNGGCC 
TAATCNTNTN ATTTNTNNNN NNANNNNNNN TNNNNNNNNN GNTNTTNNNC 
NCCCNNNNNN NNGNNCNCCN NCNCTNNNTG NGNNNNNNTN TNANNNNNNN 
CCCN

AT3G54910.1

Model type: Protein coding
Short Description: RNI-like superfamily protein
Computational Description: RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54910.2

Model type: Protein coding
Short Description: RNI-like superfamily protein
Computational Description: RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54910.3

Model type: Protein coding
Short Description: RNI-like superfamily protein
Computational Description: RNI-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT4G10400.2); Has 997 Blast hits to 979 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 993; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G54920.1

Model type: Protein coding
Short Description: Pectin lyase-like superfamily protein
Curator Summary: Powdery mildew resistant mutant encodes a pectate lyase-like protein
Computational Description: powdery mildew resistant 6 (PMR6); CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT5G04310.1); Has 2753 Blast hits to 2553 proteins in 415 species: Archae - 3; Bacteria - 1039; Metazoa - 313; Fungi - 409; Plants - 814; Viruses - 7; Other Eukaryotes - 168 (source: NCBI BLink).
Link: InterPro Scan - TAIR