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12-3272-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 20530282 [Map]; Strand: c
      • AT1G55020.1 - [+] show detail - lipoxygenase 1
        Distance: 9; Region: intergenic
      • AT1G55030.1 - [+] show detail - RNI-like superfamily protein
        Distance: 135; Region: intergenic
    Flanking Genome Sequence: 12-3272-1 - 5-prime edge 
    GTTATAAATG TTGAGATTTG ATATTTTGTC TCAGAATGAT ACATCTTGGG 
    GTTTATAGAT AAATTGATAA ACACAATTTT AATATGTATA GACTTGCTTT 
    ATTCTGATGT TTATTATAAC AATAATCAAA GTTTATAACT TGTAGAACAA 
    GTAAACCATG GGATATAGAA CAACACGTGA CTCTGACACA ATTCTGAAGC 
    GAGAGTTGTT TCAGATAGAG ACGCTATTTG GAATT

AT1G55020.1

Model type
Protein coding
Short Description
lipoxygenase 1
Curator Summary
lipoxygenase, a defense gene conferring resistance Xanthomonas campestris
Computational Description
lipoxygenase 1 (LOX1); CONTAINS InterPro DOMAIN/s: Lipoxygenase, iron binding site (InterPro:IPR020833), Lipoxygenase, C-terminal (InterPro:IPR013819), Lipoxygenase, LH2 (InterPro:IPR001024), Lipase/lipooxygenase, PLAT/LH2 (InterPro:IPR008976), Lipoxygenase, conserved site (InterPro:IPR020834), Lipoxygenase (InterPro:IPR000907), Lipoxygenase, plant (InterPro:IPR001246); BEST Arabidopsis thaliana protein match is: PLAT/LH2 domain-containing lipoxygenase family protein (TAIR:AT3G22400.1); Has 1484 Blast hits to 1444 proteins in 180 species: Archae - 0; Bacteria - 84; Metazoa - 533; Fungi - 49; Plants - 793; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G55030.1

Model type
Protein coding
Short Description
RNI-like superfamily protein
Computational Description
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 1671 Blast hits to 1640 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 45; Fungi - 2; Plants - 1624; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR