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12-3323-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 252285 [Map]; Strand: w
      • AT4G00585.1 - [+] show detail - unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; ...
        Distance: 0; Region: exon2 (5UTR)
      • AT4G00590.2 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -481; Region: promoter
      • AT4G00590.1 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -526; Region: promoter
    Flanking Genome Sequence: 12-3323-1 - 5-prime edge 
    CCAGTCATAC TCCAGACTTT GGCTCTGAAA TCGCCTCCTT CTGCTCCATG 
    TCCATGCTCA CCTCCTCCCA TTTTTCCTAG ATCGGATCAA TTACTTCCAC 
    CAAAAACTGA TTCCTTTTCC TAATTCGACA ATGAAGATAG CCAGATCGAT 
    ATCAGTGACA TAGAATCAAA ATGATGTCAA CCCTAGCCTC CCTAACATTT 
    AAAAATTATT ACAAAATTCA ACAAGTGAGA ATTGAAATAG AATGATTCCG 
    GCGAACCGGT GATCAGAAAT CGGCTTACCT TAGTGAAATC AGAAGGATCG 
    CAAAGAAGAC GAAGAAGATG AGACTTCTTC TACTTGTTCT AAAGAGTTAA 
    GAGGGTGAGC GAAACGAGTT ATGGCATTTG TTTGTAAATT TTCTGAATT

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 252169 [Map]; Strand: w
      • AT4G00585.1 - [+] show detail - unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; ...
        Distance: 0; Region: exon2 (CDS)
      • AT4G00590.2 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -597; Region: promoter
      • AT4G00590.1 - [+] show detail - N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
        Distance: -642; Region: promoter
    Flanking Genome Sequence: 12-3323-1 - 3-prime edge 
    ATGACTGGTG GGCCTAACTG TAGGCCCAAA CATTGGCGTC GGAACACCGC 
    CATTGCTATG TTCGGCGTTT TCCTTGTGTG CATCCCCATC GCCAAGCTAT 
    CTGCTAAGCT

AT4G00585.1

Model type
Protein coding
Computational Description
unknown protein; Has 47 Blast hits to 47 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 7; Plants - 33; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.1

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1); Has 3104 Blast hits to 3030 proteins in 885 species: Archae - 117; Bacteria - 1482; Metazoa - 502; Fungi - 255; Plants - 169; Viruses - 0; Other Eukaryotes - 579 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00590.2

Model type
Protein coding
Short Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Computational Description
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; FUNCTIONS IN: hydrolase activity; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase T2, asparaginase 2 (InterPro:IPR000246); BEST Arabidopsis thaliana protein match is: N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (TAIR:AT3G16150.1).
Link
InterPro Scan - TAIR