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12-3390-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309433 [Map]; Strand: w
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -324; Region: promoter
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -324; Region: promoter
      • AT1G01890.1 - [+] show detail - pre-tRNA
        Distance: -86; Region: promoter
      • AT1G01900.1 - [+] show detail - subtilase family protein
        Distance: -883; Region: promoter
    Flanking Genome Sequence: 12-3390-1 - 5-prime edge 
    ATGATNATGA NGAGATTGNG NNNNNACCAG NCNAGGGCCG TCGCANNACN 
    GNGNNANGTA TGGAGAGTAG TCGGNGTCAC ACATGNGGCC TGTNGGNAAA 
    ATAGTGAAAC ACACCGATAA ACCATTTCTA GACTGTAGTT ATCCTTTTTT 
    AAAAGGGTAT TGAATTAAAT GAGAAGATAC GATGAATATC TCCGAATTTC 
    ATAGGAGTGA GGACATCAAA GAAAAAAAAA AAAAANGGGN GGGGGGGGGT 
    NAANGGGNNA AAATNGGGNN GNAANNCCCN CCCNNAAGGG GNTTNNNNGG 
    NANGGGGAAA NANCCANGGT TTNNANNTTN GGNAAATNTA AAAAAAANNN 
    GGGTNNNGGG GGNNNNNAAA AANNNAAAGC NCCNCCCNAN TNTGGGGGGG 
    GNGGGCCCCC CCCCNNNCTN TTNANGGNNC CCCCCCCCCC CNNGGGGGGG 
    GANNGGGNGG GTTTNCGGGG NNTTTTNNAA AAANNAAAAN CNGTNNNTTT 
    NTTTTTTTTC CNAANAAAAA ATTTCNAGGG NTTTTTTTTT TTTTNTTNGN 
    NANANAGAAA NANNTTTGGG GAATTTNCCN NCGNGNNANG AAAAAAGGGG 
    NCCCCNTANA AAANNAAAAN GNGGANNAGG GNGNCAAANN AGGGNGGGGN 
    AAATNNNNAA ANNNNAAAAG GTGNNNATAG GGGGNNNAAA AAAANNNTNN 
    ANNNGGGGGG GGNNNAAAAN ANGNGNNAGN GGGNGGGNGA GNG

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 309326 [Map]; Strand: w
      • AT1G01880.1 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -217; Region: promoter
      • AT1G01880.2 - [+] show detail - 5'-3' exonuclease family protein
        Distance: -217; Region: promoter
      • AT1G01890.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
      • AT1G01900.1 - [+] show detail - subtilase family protein
        Distance: -990; Region: promoter
    Flanking Genome Sequence: 12-3390-1 - 3-prime edge 
    ATTAAAACGG NAGAGGTATT TTACCGACCG TTACCGTCTA GCTCAGTTGG 
    TAGAGCGCAA GGCTCTTAAC CTTGTGGTCG TGGGTTCGAG CCCCACGGTG 
    GGCGATCTGT ATAAATAGTT TTTTATTTTA TTTTTTCTTA ATAGACTTAA 
    TGGGCTACAG AGATATCATC CGGGCTAATT GTTGGGCCCA TAACCGTGGC 
    GGGTGATGTG ACGATGCCAT AAATAGATAG GCACAACACA AGCGAGTCCA 
    ACAAGACTCG CATAACGGTC AGAAATTGAT TCTATCCTTC GGCTTCCTTT 
    TCTTTTAATT CGCCTTTTGC TGGTTTAGGC TTTTCGGTTT GTGATCTTCC 
    GCTCCGCTCC GCTAGGCTAT TACGGCATTT TGATTGAATG GGTGTGGGAG 
    GCAATTTCTG GGATTTGCTG AGACCATATG CTCAGCAACA AGGCTTTGAT 
    TTTCTCAGAA ACAAACGAGT CGCTGTTGAT CTCTCCTTCT GGATCGTTCA 
    GCATGAAACC GCTGTTAAGG GTTTCGTCCT TAAACCTCAC CTCCGACTCA 
    CTTTCTTCCG TACTATCAAC CTCTTCTCAA AGGTCCCATT TTTTTTTTTT 
    TTTTGGGNGC CCCCTTTTNN TCTTTGGNNN NGCNNNCNNN NAATTTCCCN 
    AATTNCGNCC NCCTTNATNC CTTTTTTNGG CATGGNCAAA AAAAANTNCC 
    TTTTTNNNGG GANNNNGGTT TTTTTAAAAA TTTTANAGGG TTCCCTTGGN 
    NNAAAAANTT NNATTTTTTT TTNNTNNNAA AAATATANNC GGGTANNGGN 
    TTNACNTG

AT1G01880.1

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2); Has 2133 Blast hits to 1941 proteins in 373 species: Archae - 274; Bacteria - 9; Metazoa - 492; Fungi - 719; Plants - 217; Viruses - 17; Other Eukaryotes - 405 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G01880.2

Model type
Protein coding
Short Description
5'-3' exonuclease family protein
Computational Description
5'-3' exonuclease family protein; FUNCTIONS IN: DNA binding, catalytic activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: XPG N-terminal (InterPro:IPR006085), DNA repair protein (XPGC)/yeast Rad (InterPro:IPR006084), 5'-3' exonuclease, C-terminal subdomain (InterPro:IPR020045), Helix-hairpin-helix motif, class 2 (InterPro:IPR008918), XPG/RAD2 endonuclease (InterPro:IPR006086); BEST Arabidopsis thaliana protein match is: single-stranded DNA endonuclease family protein (TAIR:AT3G48900.2).
Link
InterPro Scan - TAIR

AT1G01890.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Lys (anticodon: CTT)
Link
InterPro Scan - TAIR

AT1G01900.1

Model type
Protein coding
Short Description
subtilase family protein
Curator Summary
Encodes AtSBT1.1, a subtilisin-like serine protease. Cleaves the phytosulfokine AtPSK4, a growth promoting peptide.
Computational Description
SBTI1.1; FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: extracellular matrix, apoplast, cell wall; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 6944 Blast hits to 6289 proteins in 1039 species: Archae - 198; Bacteria - 3931; Metazoa - 46; Fungi - 433; Plants - 1873; Viruses - 0; Other Eukaryotes - 463 (source: NCBI BLink).
Link
InterPro Scan - TAIR