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12-3395-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18073317 [Map]; Strand: c
      • AT4G38680.1 - [+] show detail - glycine rich protein 2
        Distance: -135; Region: promoter
    Flanking Genome Sequence: 12-3395-1 - 5-prime edge
    CGTCCAGATG CAACTGCTTG CTGGGCCAAC GATCCATTCT CTTTCCCGAA 
    ATGGATTAAT CAATTTAAGC CTTATCACAT GCTGGCCCAT TTTCTAACTC
    CTCTTTTCTT TTTTAACTTA CTTTTCTTTC TTTTAATATT TTAGTTGCAG
    ATTCATTTTC GAAATCAACG AAATTTATGT TTTTTAATTT TCTGGGTATC
    TTAATCGCGA GATTTTTTAT TTTAATATCA CGCTCGAATA TACAATTCGG
    AATGTGCAGA TGTTTTTTTT GAAGGCAATT TANAAAAATA GACAAAAATC
    GAACAAACAT ATATAGAAAT AGAGATC
  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18073433 [Map]; Strand: c
      • AT4G38680.1 - [+] show detail - glycine rich protein 2
        Distance: -251; Region: promoter
    Flanking Genome Sequence: 12-3395-1 - 3-prime edge
    TCTGGACGGT TGGGGTGTTT TTCACGAGGG ATATCAGCCG TCAGATTCTG 
    ATTTTAGATC

AT4G38680.1

Model type
Protein coding
Short Description
glycine rich protein 2
Curator Summary
Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.
Computational Description
glycine rich protein 2 (GRP2); FUNCTIONS IN: double-stranded DNA binding, mRNA binding, single-stranded DNA binding, nucleic acid binding; INVOLVED IN: stamen development, vegetative to reproductive phase transition of meristem, response to cold, seed development, DNA duplex unwinding; LOCATED IN: nucleolus, nucleus, plasma membrane, cytoplasm; EXPRESSED IN: 37 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Cold shock protein (InterPro:IPR011129), Cold-shock conserved site (InterPro:IPR019844), Zinc finger, CCHC-type (InterPro:IPR001878), Cold-shock protein, DNA-binding (InterPro:IPR002059); BEST Arabidopsis thaliana protein match is: glycine-rich protein 2B (TAIR:AT2G21060.1); Has 150401 Blast hits to 55289 proteins in 3379 species: Archae - 285; Bacteria - 51625; Metazoa - 48133; Fungi - 9113; Plants - 13783; Viruses - 1771; Other Eukaryotes - 25691 (source: NCBI BLink).
Link
InterPro Scan - TAIR