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12-3414-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21187302 [Map]; Strand: c
      • AT1G56550.1 - [+] show detail - RhamnoGalacturonan specific Xylosyltransferase 1
        Distance: 0; Region: intron1 (CDS)
    Flanking Genome Sequence: 12-3414-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCCG GATATGTTTG AAGTTATACC ACAAAGACGC 
    TATCCATGCA TAGACCAAAC TATTCTTGGG GTAGAATAGT ATCCCATGCC 
    AGCTAGTATG TGTTTTTGTC TCTAAGTGGT GTTATAGGAT ATTATGGTTG 
    GAGGTTACCG ATCATACATC TGTAATAGTA TGTCCCATAT TAGGTCCCAT 
    ACTTCTAATC TCTCTTCAAT TTTTTCCAAA AAGTCGATGA CTATTCATAA 
    CTATCACATT AACATCATAA AAGAGTTAGA CCAAATGTGA TAATATATGC 
    AAAGAATTTG AATACTGCAA TCCGATGTTT TACCTAATTT ATTATATTAT 
    ATTAGGGTTT CTTCAATCTG ACATCTCGGA GGCCACAACA TCTCTTAAAC 
    ATTTTGGAGC TAGGTTACAA TGTTATGTAC AATGATGTTG ATATGGTCTG 
    GCTACAAGAT CCATTTGACT ATTTACAAGG AAGCTACGAT GCATACTTCA 
    TGGATGACAT GATTGCGGTA CGTAACATAT TTGCATCTTT TGCATTTTAA 
    TTCTAGTGTT TATGTAATTT TATTCTTGGT TTGATTTTTG TGCTGCCAGA 
    TTAAGCCTTT GAATCACTCC CATGATTTAC CACCTCTAAG TCGAAGCGGA 
    GTTACTTATG TATGTAGCTG CATGATTTTC TTGCGTTCCA CTGATGGCGG 
    AAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 21201043 [Map]; Strand: w
      • AT1G56580.1 - [+] show detail - Protein of unknown function, DUF538
        Distance: -2087; Region: intergenic
      • AT1G56590.1 - [+] show detail - Clathrin adaptor complexes medium subunit family protein
        Distance: 977; Region: intergenic
    Flanking Genome Sequence: 12-3414-1 - 3-prime edge 
    ATTAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATTAT 
    GTATGGTTAA TATCAGTCTC GTGCAATCTT CATCATAGAG ATTAATGACC 
    CTAAATCTGA TAATGATGTA ATGCTTTTTC ACCGTTAAAT GTTTATTTTT 
    CCAACTACAT TTTTAAATTG ATAGTCCTTC TATTATGATT TTTTAAGATT 
    GAAAGCT

AT1G56550.1

Model type
Protein coding
Short Description
RhamnoGalacturonan specific Xylosyltransferase 1
Curator Summary
Encodes a rhamnogalacturonan II specific xylosyltransferase.
Computational Description
RhamnoGalacturonan specific Xylosyltransferase 1 (RXGT1); FUNCTIONS IN: UDP-xylosyltransferase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: rosette leaf, fruit distal end, cauline leaf, fruit proximal end, socket cell; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: Nucleotide-diphospho-sugar transferase family protein (TAIR:AT4G01220.1); Has 348 Blast hits to 344 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 314; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G56580.1

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Curator Summary
Encodes SMALLER WITH VARIABLE BRANCHES (SVB), a protein with a conserved domain of unknown function (DUF538). The trichomes of the SVB mutants are smaller and exhibit branches of variable length and number.
Computational Description
SMALLER WITH VARIABLE BRANCHES (SVB); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT1G09310.1); Has 365 Blast hits to 365 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 365; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G56590.1

Model type
Protein coding
Short Description
Clathrin adaptor complexes medium subunit family protein
Curator Summary
Involved in vesicle trafficking between the trans -Golgi network and vacuoles.
Computational Description
ZIG SUPPRESSOR 4 (ZIP4); INVOLVED IN: intracellular protein transport, gravitropism, protein targeting to vacuole; LOCATED IN: clathrin vesicle coat, clathrin adaptor complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Clathrin adaptor, mu subunit, conserved site (InterPro:IPR018240), Clathrin adaptor, mu subunit (InterPro:IPR001392), Clathrin adaptor, mu subunit, C-terminal (InterPro:IPR008968), Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: Clathrin adaptor complexes medium subunit family protein (TAIR:AT1G60780.1); Has 1984 Blast hits to 1954 proteins in 323 species: Archae - 0; Bacteria - 0; Metazoa - 926; Fungi - 482; Plants - 226; Viruses - 0; Other Eukaryotes - 350 (source: NCBI BLink).
Link
InterPro Scan - TAIR