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12-3500-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19826537 [Map]; Strand: w
      • AT1G53170.1 - [+] show detail - ethylene response factor 8
        Distance: -4285; Region: intergenic
      • AT1G53180.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -4904; Region: intergenic
    Flanking Genome Sequence: 12-3500-1 - 5-prime edge 
    NCGATGACTC TGCCACAGCG CGCGGCGAAT ATTCTTGTTT CTAATNTCCG 
    CGGGTTTTCA TGCNTGCAAA CGTTACACAG AAGAATCCAT CCGTCACACA 
    AAAGATGACA ATCAGATTAA CTATCTAAAT ATGAAATTGG AGTCGAGGCC 
    GGTATAGTGC ATAAGTCACA TAAACCAAGG ATTATGGCCC AAAATTTTAT 
    AGATCATTGA AAGTTAGAAT TGGTGTTTTA ATTTTTTTGG GTGAAATGAT 
    GAGATTTGGA TTCAAAAATT TGCTTTTGTA GTCTGGTTTT GATGATTAAC 
    ATTTTTCTTT GTCGTTACCA TTTCATGTTC TTTTCGTTTT TTTTTTTGGG 
    GNNNCNNNNT TTTTTTNGTT TNTAAAATTN NNACTTNCAA ANGGGNCNCC 
    AANCANTNTT TTTNATTNGG NCCTTTNNNA NCNTGGNNCC GNCCGGNTTT 
    NNTNAAAGTN TTTNGNNTAT TNNAAAANAA ATTNGTTATT TTAAAAAAAA 
    AAATTTTTTT NGNNGTNANG GGGAAAANNN NTTTTTNGGG TTTTTAAAAN 
    CANAAAGGGN TTTGANCCCC AAAAANTAAA ANTAAAANCN GNGAANTTTN 
    CAAAAAANGN GGAAAAAAAA AGNGTTTTAT TTNNNTAAAA CCNNTTTTTA 
    NGGTTTGTTT NGGGGGAAAA NNTTTTAAAA CNTTTTNTCN GTTTTTTTGG 
    GNAAAAAAAA ANCCNNTTTA ANNGGGTNCC CGNCNNCNGT NCCTTT

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 19826421 [Map]; Strand: w
      • AT1G53170.1 - [+] show detail - ethylene response factor 8
        Distance: -4169; Region: intergenic
      • AT1G53180.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -5020; Region: intergenic
    Flanking Genome Sequence: 12-3500-1 - 3-prime edge 
    GTCATCGTAG CATTTATCTC ACTGATCCTC GCCGGCTCAG GCACATCCAT 
    TGAGCACGTG TCATGTTAAC ATGTAATCAT GTAATTGACT TTGTATTTTG 
    TTGTTGGATT AGGAAACGGA TTAAATTTGT CGGCCAAATT AACNTTGGTT 
    ATAATATCAT ATGATATCAA GTCCAGTCTA TAGTATTAAG GATCTTGTAT 
    TATCACAACA TATAATTAAT TAGCTCTTAT ATTCCCGTAA CTTTNTTCTT 
    TTAAAATAAA ACTTGTAGAG AAGCAAATCT CTAGAAACAC TTGTGTGGTC 
    TAGTTATCGG TTGAGTGTAA ATTTAAACCC CAAATCTCTC TTAAAATCTT 
    TTTCGAACAC GTGGTGTTAC TCACAAAGAT TATTTTCTTT GGTTCGATAA 
    TTTAATTATG TAGATACAGT TTGTAGTATA GTATGTAATT TATATTTGAT 
    ATGGCATGAA ATTCTCAAAG GTTTGATTAT TAAAATCCAA CTCTTTTATA 
    GTTTTCCTTT TAGGAAATGA ACAATAACTT TTTTGAATT

AT1G53170.1

Model type
Protein coding
Short Description
ethylene response factor 8
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.
Computational Description
ethylene response factor 8 (ERF8); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene responsive element binding factor 4 (TAIR:AT3G15210.1); Has 5970 Blast hits to 5718 proteins in 254 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 5959; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G53180.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15115.1); Has 58 Blast hits to 56 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 4; Plants - 29; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Link
InterPro Scan - TAIR