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12-3501-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 584641 [Map]; Strand: w
      • AT2G02220.1 - [+] show detail - phytosulfokin receptor 1
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3501-1 - 5-prime edge 
    GGGAAAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCACTTCA ACAACGCTGG ACCGTCGTTA CGCTCGTGTA 
    GCCAATAGTC TAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 583920 [Map]; Strand: w
      • AT2G02210.1 - [+] show detail - transposable element gene
        Distance: -1870; Region: intergenic
      • AT2G02220.1 - [+] show detail - phytosulfokin receptor 1
        Distance: 58; Region: intergenic
    Flanking Genome Sequence: 12-3501-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCAAAGA 
    ATATATACTG TCTCAGAAAA ATGAAAAATC TTTTTGTAGT GTTTCAGAAA 
    TAATGAGTTC TTGAAAAAAC ATGTCTCAAG CAATTTAAAT GAGCAACATA 
    GATTAATAAT TTGTGTTACA TCTTTATTCT GTGATTTGCN TTTGTGGATA 
    CTCTGTTGAT TATGTTATAC CTTTTAGAGA TTTTTGGTTT AATTAAAAAA 
    TATATATATA TTTGGTAGCT AAATTCCTTT TGGTCTTCAA CAAAAGAATT

AT2G02210.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
pseudogene, Ulp1 protease family, contains Pfam profile PF02902: Ulp1 protease family, C-terminal catalytic domain; similar to At1g32840, At4g04010, At2g06430, At2g15140, At2g04980, At2g14130, At3g44500, At2g15190, At3g47260, At5g34900, At3g29210, At3g32900
Link
InterPro Scan - TAIR

AT2G02220.1

Model type
Protein coding
Short Description
phytosulfokin receptor 1
Curator Summary
Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ).
Computational Description
phytosulfokin receptor 1 (PSKR1); FUNCTIONS IN: peptide receptor activity, protein serine/threonine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, transmembrane receptor protein tyrosine kinase signaling pathway, response to wounding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat, typical subtype (InterPro:IPR003591), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: phytosylfokine-alpha receptor 2 (TAIR:AT5G53890.1); Has 188205 Blast hits to 128830 proteins in 4018 species: Archae - 120; Bacteria - 18455; Metazoa - 56562; Fungi - 9680; Plants - 79633; Viruses - 405; Other Eukaryotes - 23350 (source: NCBI BLink).
Link
InterPro Scan - TAIR