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12-3509-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22881153 [Map]; Strand: w
      • AT1G61890.1 - [+] show detail - MATE efflux family protein
        Distance: -9873; Region: intergenic
      • AT1G61900.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: 1062; Region: intergenic
    Flanking Genome Sequence: 12-3509-1 - 5-prime edge 
    CTAACGTAGG CATTCATATT TATTTTTTCT TTCAAACATT CATATTCTTT 
    AATCACAGTA CCAGCCAATT AATTCTATTA TCCTGATAAC TATAAAACAA 
    TAAACTGATC TGATACATAT ATTATAAATT GTGGACCATC ATAAGTCCAT 
    GATATTTAGT GACTTTAGTC TAGTGGTCGC GGTCGACATA AAAATCAATG 
    CCATGCAGGC TGCAGCCATC ATCGACTTAA AAGGTTTGTG ACATCCTATA 
    AGATATAGTT GAGTTTGAAA ATGAAAAGAA AATTAGAGTT TGAAATTTAC 
    AGAAAATATG TTTGGAAATA ACATTTTTTT ATATAAGTTT ATATGACTCT 
    CCTACTATAA TTATAAACTA TGATAGGCCA AATAAATCAA AATGAATACT 
    ATTGGCTTAC AATTATAAAA AATTGTTAAT TACAGAAAAT GATGTATTTA 
    TAACTAATTT TCTTTCTTCT TAATAGTTGT GAAAATGTTA AAAATTGAAT 
    TAGTTAGGAA TAGATGGAGT AATTTGCATG GTTAACCAAT AATTTGCATG 
    CAAAAACAAT CAAAGACAAA GAGAGGCCCA CATTGCCCTT ATCTATTCTT 
    AGAGACTCTA TCCCATTAAC TAAATTATGG GCCTGTTGAC CAATGTCTCC 
    ATATACAAAT GTTTTTCGAT ATTTCTAACG GNGTGTATGA TTGAATATTA 
    ACGGGGGGNG ACATAAGNGG GGGNTGGNNA ANNNGATNNT GGGGGN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22796837 [Map]; Strand: w
      • AT1G61732.1 - [+] show detail - MIR776a; miRNA
        Distance: 1102; Region: intergenic
      • AT1G61740.1 - [+] show detail - Sulfite exporter TauE/SafE family protein
        Distance: 1232; Region: intergenic
    Flanking Genome Sequence: 12-3509-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCTACAC 
    CCATTTTGAA GCTCGCATTG CAGTTGACCC AATTGTTATT GGTGGCTTAA 
    ATCCAATGGA CTATACGTCC TTGCAAGCTC CTTCCGTAGT CAAGTTCTTG 
    GCTCCATCAG AAAATAATAT GTTTTTGATA TATCTCAAGT TAAAAGACTT 
    ATTATTTCAT GGTTCTGTTT TCATCAACAA TATATGAAAA AAACAAACAA 
    TGTCTATGAT TCAACACATG TTGCTAGGCA TATAACATAC TGGAACCACA 
    AGTATATATG CAATTATTTG TTTTTGTGTC TTCCCTCGTG GGACTAAAAG 
    GTGGTTCAAA AGGTTATAAC CGAGCATGGA AGAGCTTCGA TTATTATGTT 
    CTTGGTTGGT ATTGTCATGG TATTGAACAG TGTTGATGAC TAGCTATGGA 
    TATATGTTTG GAATGATTTG TCTCTGTAGT TACATGACTT TCAAATTACC 
    ACAGAAATAA AGTTTTGGTT TCTTTGCTAA ATAGTTCAAA ATAGATGTGT 
    ATAACCATAT CATCATATTC TTTTGGTTGT TCCTTCATCC ATTTGGTTAT 
    TAGTCCATAA TGCCATGTCA TCATTAAACT TATAACATTA TTCTTGAAAT 
    TGCTATTGTC ACTTTACGCA GGAAATAATC GATCAAATCT TTACTTGTTG 
    NCNCATGCAC TCAATANTAC ACGGAATCAG AAACAGAAAC NGAGCAAAAC 
    AGAGGAAAAG ACNANCTTAA NTAGTTCGAN CTCNCATANT GAANAATACN 
    NCTAAGCTNC CNCCCNG

AT1G61732.1

Model type
miRNA
Short Description
MIR776a; miRNA
Curator Summary
Encodes a microRNA of unknown function. MicroRNAs are regulatory RNAs with a mature length of ~21-nucleotides that are processed from hairpin precursors by Dicer-like enzymes. MicroRNAs can negatively regulate gene expression by attenuating translation or by directing mRNA cleavage. Mature sequence: UCUAAGUCUUCUAUUGAUGUU
Link
InterPro Scan - TAIR

AT1G61740.1

Model type
Protein coding
Short Description
Sulfite exporter TauE/SafE family protein
Computational Description
Sulfite exporter TauE/SafE family protein; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF81 (InterPro:IPR002781); BEST Arabidopsis thaliana protein match is: Sulfite exporter TauE/SafE family protein (TAIR:AT1G11540.1); Has 2571 Blast hits to 2364 proteins in 652 species: Archae - 89; Bacteria - 1424; Metazoa - 0; Fungi - 0; Plants - 205; Viruses - 0; Other Eukaryotes - 853 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61890.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 9516 Blast hits to 9487 proteins in 1915 species: Archae - 228; Bacteria - 6498; Metazoa - 145; Fungi - 328; Plants - 1371; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G61900.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 65 Blast hits to 65 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR