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12-3519-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6025146 [Map]; Strand: c
      • AT2G14220.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-3519-1 - 5-prime edge
    TATGAAACCA CCACCTGGTT TTTATCCAAA AGATGAGCAG AAAGTTTGTC 
    GGTTAAGAAA GTTAATATAT GGCCTTAAAC AAGCTCCGAG GTGTTGGTTC
    GAAAAACTCA CATCATCTCT TCGTGACTAT GGGTTTCAGC AAACACATGC
    NTGATTATTC GTTGTTCACC TTTGATAGAG ATGGTATTCA GATTCGCTTG
    CTCATATACG TCGACGACAT GATTCTTACC GGTAACAATG ACGCATCATT
    GGAAGAATTT AAGGTCTATC TCTCCTCTTG CTTCAAGATG AAAGATCTTG
    GTCCTTTAAA ATACTTTCTG GGTATAGAGG TCTCTCGCAA CAAATCTGGG
    TTCTATCTGA GCCAACGAAA ATACNCTTTG GGATATTGTC ACCGAAACCG
    ACATGTTAGC CTCCANGCCT GCCTCATTTC CGTTGGAACA AAATCACCAA
    CTTGCTTTAT CAACGTCACC TNTGNTGGTC NATCCGTCTC CATATCGCCG
    CTTAATAGGT CAGTTTATNT ACTTGGCAAC CACTCGACCT GATTTAGCTT
    TTNGAGTTNA TACTCTGGCG CAGNTTATGC AACCGCACGC GNGAAGATAT
    NNGCANACAG CTTTGCGNGT TGNTCNGCTA CATAAAAGGN ACCNNCTGGN
    CAAAGACNCC NCTNGAGNTT TTGCCATNGN ATGNANNGNT NAAANGGTTC
    ATGNTGANTN CANNNTGGTN TANCTNNNCC NNTTNNCCGG N
  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 6025262 [Map]; Strand: c
      • AT2G14220.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: 12-3519-1 - 3-prime edge
    GTTTCATATA CACCTCTTCT TCAAGATCTC CGTGAAGAAA GGCGTTGTAA 
    ACGTCCATCT GATAAACCGG CCAATCATTC CCAGCTGCAA CCTTTAAAAA
    CAAACGAACC GTACCCATTT TAGCTACTGG AGCAAACGTT TCTCCATAGT
    CTTCACCTTC AATTTGTTTG TTACCAAGAG CAACCAACCT TGCCTTGTAA
    CGTTCAATCG TGCCGTCCGA ATTGTACTTG ATCTTGTAGA CCCATTTGCT
    CCCAATGGCT CGTTTCCCAG GTGGAAGATT CTCTAATGTC CATGTTTCGT
    TTTCTTCTGA AGCACCCACC TCTGTGCCCA TAGCTTTCTT CCATCGTTCA
    TTCTCCATAG CTGACTTGAA TGATTTGGGC TCAATATTCT CAGTGATAGC
    CGCTAGATAA ACACGATGTG TCTCTGAAAA ACGTGTACAA GAGACATAGT
    TTGCAATGGG ATATTGGGTT TTACCAGACT TGTTGAGCAA TTTTCCATGT
    GCCGTATTAA CCACATAATT GTTGAGTCTG ACAGATGGAA TTTTCGGTCT
    CTTTCCTCGA CCCACAGATT TGATGATGGT GGCACAGGAT TCGTGGAGTT
    AGACGTAGCT TCGAGGGTAG TCAATNCTTG ATCGGAATTG TCAGACTGAG
    TTGTGGAGGT CGGTGGTGAC NAANATAAAT ANAGGAAGTG GACGGAAGGC
    GTNGAGAGAC TCNNGAGGAT GAAGAAGCNA TGTTTGTNNN GGNGTNGG

AT2G14220.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 1.6e-167 P-value blast match to GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)GB:BAA78423 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)gi|4996361|dbj|BAA78423.1| polyprotein (Arabidopsis thaliana) (Ty1_Copia-element)
Link
InterPro Scan - TAIR