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12-3521-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19534386 [Map]; Strand: c
      • AT2G47620.1 - [+] show detail - SWITCH/sucrose nonfermenting 3A
        Distance: 0; Region: exon7 (3UTR)
      • AT2G47630.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -117; Region: promoter
    Flanking Genome Sequence: 12-3521-1 - 5-prime edge 
    CGTGTGAATT AGTAGAGAGA CCCATCCATT GGTCAGACAT ATCGACAAAA 
    GAGGTATGTA ACCTAAACCT ACTCTCCTCA TTAAGTCAAT AAAACACATT 
    AATACTAAAT ACATATAATC CTCAAAAGTC AACATAACAA ATCCATAAGG 
    AATGAGAAAA CAACTCTACC CCAAGAGAAA AAAAAAGTNC GAATGAAAGA 
    AGAAGATCAT TTCACGTACG TATGATCCCA ACGTTNGGTA ATACCGCTTC 
    TAAACGCGCA TTGCAAAACG CTAACCCTCT CTTGGATGAT NGTTTCCTTT 
    ACACCCTCTA TCACTTTCTC TTCTTCATCC ATTATCGATT CCAAGTCGTC 
    TANAAACTTC AACTTGCTCT GCAGTTTCTT CAGCTGAGTN CAACAAAGAG 
    AAGCAAAACA TGTCCGGTTC AAGACACAAA CACAGNGGAA CAGACACAAA 
    TGTTTTAATG TTGTTACAAG TTACAACCAA CCTGTNGTTC TATTACTGTC 
    GCAGCTAACT GTTCCATTTC TCTTTCTTCT TGATCAGCCA GTATTTTCGC 
    TNGTGCAGCC GCAGCTCCTA NAGCTGTNGC CACAGACGCT CTTATCCTTA 
    ACGCTACAGG TAGACCCTGA GGCCCCGTNT GCAAATATAT AACGATTTCC 
    AAATCTTTAA GCCTTGAGCT TTCATTATAA ACCTAGGGAA TGCAGATTGN 
    AATCACAACC ACANTTNACC TTTTCTCTTT TTGGCNGTNC CTCCATAT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19534502 [Map]; Strand: c
      • AT2G47630.1 - [+] show detail - alpha/beta-Hydrolases superfamily protein
        Distance: -1; Region: promoter
    Flanking Genome Sequence: 12-3521-1 - 3-prime edge 
    TTCACACGCG CCCAGTGTGA CGTCAAATAA ATAAAATTCC GAAAACATTT 
    TCTGAGCTTT CCATAATTTG GAAAAAAGTG AATTGAAAAA AAGAACAGTG 
    ACACTCTTGT TTCTATAAAT TGGTGAGACC AGTCCTCAAA ACCCCTTCGT 
    CACCTTCAGT GTCTCTCTCT CAAGATCTAG CTCCGGTCAT GAAGTCGTCG 
    GAATT

AT2G47620.1

Model type
Protein coding
Short Description
SWITCH/sucrose nonfermenting 3A
Curator Summary
Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.
Computational Description
SWITCH/sucrose nonfermenting 3A (SWI3A); FUNCTIONS IN: DNA binding; INVOLVED IN: chromatin remodeling; LOCATED IN: SWI/SNF complex; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), SWIRM (InterPro:IPR007526), SANT, eukarya (InterPro:IPR017884); BEST Arabidopsis thaliana protein match is: SWITCH/sucrose nonfermenting 3C (TAIR:AT1G21700.1); Has 887 Blast hits to 703 proteins in 193 species: Archae - 0; Bacteria - 3; Metazoa - 393; Fungi - 212; Plants - 178; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47630.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; FUNCTIONS IN: catalytic activity; LOCATED IN: plasma membrane; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT3G62860.1); Has 2891 Blast hits to 2889 proteins in 983 species: Archae - 32; Bacteria - 1864; Metazoa - 111; Fungi - 108; Plants - 454; Viruses - 50; Other Eukaryotes - 272 (source: NCBI BLink).
Link
InterPro Scan - TAIR