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12-3529-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 98510 [Map]; Strand: w
      • AT5G01240.1 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: intron2 (CDS)
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: -23; Region: promoter
    Flanking Genome Sequence: 12-3529-1 - 5-prime edge 
    TGAATAATTC ATCTAGTAGT AATATTTACT ATAAGAAAAC AAATGTTTCT 
    TTATTATAAT AAGACCAAAT TACTCTTTTT TCGTTTGTCC TAAAGTTTTT 
    TTTTAATATT CTTTCATAAA ACATTCTTGA AATAAATAAC AACTTAAGTT 
    ATAAAAACAA AAATATATGG TTGCAGGTGG CACAAGTGCT GTTGACGCTG 
    CCGTATTCGT TCTCGCAGTT GGGAATGTTA TCAGGAATAT TGCTTCAAAT 
    ATTCTATGGG TTAATGGGAT CTTGGACTGC TTATCTCATC AGNGTTCTTT 
    ACGTCGAGTA TCGTGCCCGT ATGGAGAAAC AAGAAGCCAA ATCCTTCAAA 
    AACCACGTTA TTCAAGTAAA TTCTTCCTTA TTTTAGTTTA GTGACATATT 
    CNAATTTGAT CTCACTTTTA NATTTACTAA ATTGAATTGC ATGTTTGTTT 
    TGTTTTCTTA ACACAAAAAA AATAAAATAA AAAAATGGGA AGNGGTTTGA 
    AGTGCTTGAT GGGCTGCTGG GTCCGTACTG GAAAGCAGCG GGGCTCGCAT 
    TTAATTGCAC CTTCTTGTTA TTCGGATCAG TCATCCAGCT CATTGCTTGG 
    GCTAGGNACT TCTTCCTCTC TTTTTTATTG CTTTTTACCA ATCTTTTTAA 
    TAGTATATNG ATNTAGAGGG ACAAATCCCT ATNTCTAAAT GATATCATCA 
    ATNGATNCAT GTGNGNGNGN GNNGNNGGGA ATNANNCCAN AN

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 98394 [Map]; Strand: w
      • AT5G01240.1 - [+] show detail - like AUXIN RESISTANT 1
        Distance: 0; Region: exon2 (CDS)
      • AT5G01240.2 - [+] show detail - like AUXIN RESISTANT 1
        Distance: -139; Region: promoter
    Flanking Genome Sequence: 12-3529-1 - 3-prime edge 
    ATTATTCATT ATCGAAATTG TACTTACTTG ATTTGATGCA CAGCTAAACC 
    AGGCGTCCCA AGCGGACCCG CCATGCCAGA GGAAGCTCTT CATACTAAAT 
    CCATTGCCCC CGTTGCCGTC AATATCCTCC TCCGCCGCTG AATCTTCCAC 
    TTTTCTACCG GCCACCTCAT CCTCCCCGGA GACTACTATT GACTCCTCCG 
    CTTGTTTCTC ACCCGACATT AGCAATCGAT TTCTGGACGG TACACAAAGA 
    TTATTATATA AAGCAAACAA ATAATTGAAA AGTTACAATC TTTTGATTTT 
    TTATGGTTTA AAAAGAGAGA ATCTTATGAA GGAAGAAAAA TTGTCTCCAA 
    GCTCTTACCC TTTTTTCCTT TTAGTCCTGC TGAGAAGAAA CACAGAGACT 
    TTAGCTCTGT CTCTTTCTAC ACTCTCCGAA GCAGAGCACA GTATCAAAAC 
    AATAAAAGAG AACCACAAAG ATTTAATGGA AGAGGGAGGG AGGGAGAGAG 
    AGGAAAAGAG TGAAGAAGAG CTCTCTGGTT ATGTAATAAC AATGGCAAGT 
    GAGTAGGAGA GTACTGTAAT AACGAAGTCT ACTTAAAAAA ATGTTCTGTT 
    TTTTACTTTT AATGCGGCCG CCTTTGTTAT AATTATACAT GTTCAATGAG 
    AGAGAGAGAG AGAGAGCNTN NNNGCNGGAA NCTNCCANCN CGGGCCGNNN 
    ACCACCGNGN NNCNTATA

AT5G01240.1

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G01240.2

Model type
Protein coding
Short Description
like AUXIN RESISTANT 1
Curator Summary
Encodes LAX1 (LIKE AUXIN RESISTANT), a member of the AUX1 LAX family of auxin influx carriers. Required for the establishment of embryonic root cell organization.
Computational Description
like AUXIN RESISTANT 1 (LAX1); FUNCTIONS IN: transporter activity; INVOLVED IN: amino acid transport, root cap development; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: Transmembrane amino acid transporter family protein (TAIR:AT2G38120.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR