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12-3613-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Anatomical entity
/structure development stage		 Phenotype
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Flowering & Growth::dwarf/small)
vascular leaf (PO:0009025)
  • decreased length (PATO:0000574)
    (Leaves::short petiole)

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6346462 [Map]; Strand: w
      • AT4G10180.1 - [+] show detail - light-mediated development protein 1 / deetiolated1 (DET1)
        Distance: -1; Region: promoter
    Flanking Genome Sequence: 12-3613-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTGTGAGTG 
    AGAGAGAGAG AGAGAGAGAG ATACTGNGGC TTTGTTTTGG NTCTGTNGAT 
    TTTTCTCTTT TGGGAGGTNG GTTTCTCTCN NTCTGTTAAT GNNCCTGANA 
    TTGGTGTTTG AAAATGGCCC AANACAGCAA AATTGGGTCA TTGGCACNTT 
    ATTGGGATAC TACTNNCTCT TTGNNCTANG CTN

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 6346544 [Map]; Strand: w
      • AT4G10180.1 - [+] show detail - light-mediated development protein 1 / deetiolated1 (DET1)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: 12-3613-1 - 5-prime edge 
    GTCTCCTCCA TTTTCACCAC TAAAACCAGA CCAAAAACCT TCCTTTATTC 
    GTGCCCTTCT GGGCCAACAA ATGTTCACAA GCGGTAACGT CACCGCTCGG 
    GTCTTCGAAC GTCAGATTCG AACTCCTCCT CCCGGCGCTT CCGTCAGTCC 
    CCAAATCTCT CTCTCTGTCT CAATCTCTCA ATCTCAATCT CTCTTTTGCT 
    TATCTCTTTA CCTTCAATGA TAGGTAAATC GTGCAAGACA CTTCTACGAA 
    AACCTAGTCC CAAGCTACAC ACTCTACGAT GTCGAATCTC CCGATCACTG 
    TTTCCGCAAA TTCACAGAAG ACGGACTCTT CCTCATTAGT TTCAGCCGTA 
    ACCATCAAGA ACTCATAGTC TATCGTCCTT CTTGGCTCAC TTACTCCACA 
    ACCGATGATT CCACAACCAC CCTACCTCCT CTACCTCGCC GTGCTTCGAA 
    ATTCGACAGC TTTTTCACTC AACTCTACTC AGTCAATCTC GCTTCTTCTA 
    ACGAACTCAT TTGCAAAGAC TTCTTCCTCT ATCACCAAAC TCGTCGTTTC 
    GGTCTTTTCG CTACTTCAAC AGCTCAGATC CATGATTCAT CATCTCCTTC 
    TAATGACGCT GTTCCTGGTG TTCCTTCCAT TGATAAGATT ACTTTCGTAC 
    TTCTTCGGTT AGATGATGGT GTTGTTCTTG ATGAGAGAGT TTTTCTTCAT 
    GATTTCGNTA ATCTGGCTCA TAATATGGGN GNGTTT

AT4G10180.1

Model type
Protein coding
Short Description
light-mediated development protein 1 / deetiolated1 (DET1)
Curator Summary
Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling.
Computational Description
DE-ETIOLATED 1 (DET1); FUNCTIONS IN: catalytic activity; INVOLVED IN: DNA repair, negative regulation of photomorphogenesis; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: De-etiolated protein 1, Det1 (InterPro:IPR019138), Six-hairpin glycosidase-like (InterPro:IPR008928); Has 248 Blast hits to 240 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 0; Plants - 132; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR