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Mutant Lines
12-3621-1

12-3621-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

5 prime edge [+] show sequence

Chromosome: 1; Position: 20665054 [Map]; Strand: w
- AT1G55350.1 - [+] show detail - calpain-type cysteine protease family
  Distance: -432; Region: promoter
- AT1G55350.2 - [+] show detail - calpain-type cysteine protease family
  Distance: -432; Region: promoter
- AT1G55350.3 - [+] show detail - calpain-type cysteine protease family
  Distance: -432; Region: promoter
- AT1G55350.4 - [+] show detail - calpain-type cysteine protease family
  Distance: -64; Region: promoter
- AT1G55350.5 - [+] show detail - calpain-type cysteine protease family
  Distance: 0; Region: exon1 (5UTR)

GGGATANAAC TGACAAAATC GGTTATACGA TAACGGTCGG TACGGGATTT 
TCCCATCCTA CTTTCATCTT AGTAGTACTA CCTTTTTCTC ACTCTCTCTC 
TTCCTCAAAG AGACGACGTA TTGTAGAGAG AGAAAAAGTT CTTGTGGAAA 
AAAAAACACA ATTAATTTAA TAAAATAAAT AAAGCTATGG TTCTGTCCGA 
ACAAACGCTA CACGCGCGTG TGAACCATGA GCCAATGAGA TATCAAGTGG 
TGTACACGCT CTGAGTATTT ATTGGTCAGT GAGAATGGAA TGATTTANAT 
ACGGATTTAG CTAAATTAAN ATTTGTCAAA AAAAGACTTA CATCTGTTTT 
TAATTGGTTT TTATTACCTG AATTTATATG TTATCTTATT ACACTCAATA 
TTTTATCCAA TCCAATATTA ATTTANACAA AAAGTGTTAA ATGCACAAAA 
CAAAACAGAA GTATAATATT GNGATATGTG TGATTAAAAG AAAATAAAAA 
TAGTNTTATG GTAGGAAAGA AAAAAGAAGA AGACAAGAAT GATAAAATAG 
TCCCTAATTC ATGAATAAAT AGTATAATTA CTAAATAAGT TTAAGTAAGT 
CAAATTCAGG TTATAGGCTC AAAGCTCATA ACCAGGAAAA AAGAAGTGGA 
AGACCAATGT CTCTGTCACA AAATTTAAAT CATTCACTAT NTGATATAAT 
ACAAATTAAA ATTTTTAAAT NGNTTTCTTG TTTCTAATTT CTTTAATCCC 
AAATTTAAGC CGATTAAGTC AAANATAGTC TACTGAACAT ACAAAACCAT 
ATTTATTTCA AA

AT1G55350.1

Model type: Protein coding
Short Description: calpain-type cysteine protease family
Curator Summary: Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
Computational Description: DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684); Has 3377 Blast hits to 2425 proteins in 256 species: Archae - 0; Bacteria - 87; Metazoa - 1580; Fungi - 264; Plants - 115; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55350.2

Model type: Protein coding
Short Description: calpain-type cysteine protease family
Curator Summary: Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
Computational Description: DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684); Has 3377 Blast hits to 2425 proteins in 256 species: Archae - 0; Bacteria - 87; Metazoa - 1580; Fungi - 264; Plants - 115; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55350.3

Model type: Protein coding
Short Description: calpain-type cysteine protease family
Curator Summary: Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
Computational Description: DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684); Has 3377 Blast hits to 2425 proteins in 256 species: Archae - 0; Bacteria - 87; Metazoa - 1580; Fungi - 264; Plants - 115; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55350.4

Model type: Protein coding
Short Description: calpain-type cysteine protease family
Curator Summary: Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
Computational Description: DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684); Has 3377 Blast hits to 2425 proteins in 256 species: Archae - 0; Bacteria - 87; Metazoa - 1580; Fungi - 264; Plants - 115; Viruses - 0; Other Eukaryotes - 1331 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G55350.5

Model type: Protein coding
Short Description: calpain-type cysteine protease family
Curator Summary: Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway.
Computational Description: DEFECTIVE KERNEL 1 (DEK1); FUNCTIONS IN: cysteine-type endopeptidase activity, calcium-dependent cysteine-type endopeptidase activity; INVOLVED IN: cell fate specification, embryo development ending in seed dormancy; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C2, calpain, domain III (InterPro:IPR022683), Peptidase C2, calpain, large subunit, domain III (InterPro:IPR022682), Peptidase, cysteine peptidase active site (InterPro:IPR000169), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Peptidase C2, calpain, catalytic domain (InterPro:IPR001300), Peptidase C2, calpain family (InterPro:IPR022684).
Link: InterPro Scan - TAIR