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Mutant Lines
12-3710-1

12-3710-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

5 prime edge [+] show sequence
1. Chromosome: 1; Position: 23264740 [Map]; Strand: w
  - AT1G62820.1 - [+] show detail - Calcium-binding EF-hand family protein
    Distance: -391; Region: promoter
  - AT1G62830.1 - [+] show detail - LSD1-like 1
    Distance: 0; Region: exon1 (CDS)
Flanking Genome Sequence: 12-3710-1 - 5-prime edge
```
GCTTTGAGTG AAGAGATCAT CGATTCCGCT TCTTGAGAAA GACTCTTCCT 
TTCGACAAGT ACAAGCCCTA ACTTCTCACG CAAGTATTCA TTTCTCAACT 
CATCTCCATC GATTTCACCA AGCTCACTAG CCTTGCTTCC TTGTCACTAA 
ACCGTAAAGC CAAAGACTCG ATTCGGGTTT CTCCATTTGG ATC
```

3 prime edge [+] show sequence

Chromosome: 1; Position: 23264624 [Map]; Strand: w
- AT1G62820.1 - [+] show detail - Calcium-binding EF-hand family protein
  Distance: -275; Region: promoter
- AT1G62830.1 - [+] show detail - LSD1-like 1
  Distance: 0; Region: exon1 (3UTR)

CTCAAAGCTG CAAGATTAAA TCGACAGATC TTTGATTAGT AGTAAAATAG 
TTTTAGATTG AATTGTATTC AACTGCGTCT ACGTTGTAAA TTGCTGTTCT 
AATCTTTTTT GTACTTAACG CAAAACATTT TGGAAAACAA ATTGTTATTT 
GACAGTGAAG TGAAGTTTAC TTTTGTTTTA TCTTATTAAA ATTGAAAGAT 
AATCTTCACA TGGGCTTCCT AAGCCCATAT AATTGGACCA TTGATCTTTA 
AGCACTATAA AACGACGACG TATTGTCGTT TCTCTCTTTC TCCCTCTCTC 
CAAATTAACA AAAAAAAANC NCTNCNCAGN CGTCGTCAAA AACAAANAGG 
ATTNGATNGA NTT

AT1G62820.1

Model type: Protein coding
Short Description: Calcium-binding EF-hand family protein
Computational Description: Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: response to cold; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT1G12310.1); Has 16075 Blast hits to 13795 proteins in 1483 species: Archae - 0; Bacteria - 30; Metazoa - 6203; Fungi - 4627; Plants - 3186; Viruses - 0; Other Eukaryotes - 2029 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT1G62830.1

Model type: Protein coding
Short Description: LSD1-like 1
Curator Summary: Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.
Computational Description: LSD1-like 1 (LDL1); CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), SWIRM (InterPro:IPR007526); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family protein (TAIR:AT3G10390.1); Has 6747 Blast hits to 5826 proteins in 999 species: Archae - 53; Bacteria - 2706; Metazoa - 1658; Fungi - 565; Plants - 779; Viruses - 0; Other Eukaryotes - 986 (source: NCBI BLink).
Link: InterPro Scan - TAIR