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12-3720-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 464085 [Map]; Strand: c
      • AT2G01980.1 - [+] show detail - sodium proton exchanger, putative (NHX7) (SOS1)
        Distance: 759; Region: intergenic
      • AT2G01990.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 916; Region: intergenic
    Flanking Genome Sequence: 12-3720-1 - 5-prime edge 
    ACTGGATGAT CTTTCACATG TCAACTAACC TCCAACATAT GTGAGACTTA 
    ATTAGATATG TTTACAATTT GAAACTTCCA CATCAACTAA TTATTATTGA 
    AATCGTAATG AAAACATTCG AATGTTTGTC TTGAGTGAAG TATTTAACGA 
    ACCGTGGCAA TATAAGCT

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 464149 [Map]; Strand: c
      • AT2G01980.1 - [+] show detail - sodium proton exchanger, putative (NHX7) (SOS1)
        Distance: 823; Region: intergenic
      • AT2G01990.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 852; Region: intergenic
    Flanking Genome Sequence: 12-3720-1 - 3-prime edge 
    ATGAAAACGG TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC 
    CGCATCCAGT TAATTCTAAA GTAAAAAGTA TGGCTAATCA ACCAATATGA 
    TAAAGAACCG AATTTAACTC TCATCACAAA AACAAGAAGA ATATCACAAA 
    ATCTTAACCA GATCCACGAT GAGCCACATG CATGCACTAT CTTAGGCAAT 
    ATATAGGCAT ATGACTACTT ATCACTTTTC GTACAGAGCT TAGTGGCTCA 
    TGCCGACATA AGCATTACGT AAGTTATCGT ATGTAAGCT

AT2G01980.1

Model type
Protein coding
Short Description
sodium proton exchanger, putative (NHX7) (SOS1)
Curator Summary
Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance.
Computational Description
SALT OVERLY SENSITIVE 1 (SOS1); FUNCTIONS IN: sodium:hydrogen antiporter activity; INVOLVED IN: in 7 processes; LOCATED IN: plasma membrane, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Cation/H+ exchanger, conserved region (InterPro:IPR018422), Cation/H+ exchanger (InterPro:IPR006153), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710), Na+/H+ exchanger, isoforms 7/8, conserved region (InterPro:IPR018418); BEST Arabidopsis thaliana protein match is: Na+/H+ exchanger 8 (TAIR:AT1G14660.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G01990.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G14630.1); Has 118 Blast hits to 118 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 118; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR