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12-3768-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

This line has NOT been observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22869115 [Map]; Strand: w
      • AT1G61890.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: 12-3768-1 - 5-prime edge 
    TNATACACAT GGGGATCANC AATCGNGCNT ATGAAANNAC ANCCNTGNAN 
    TGNATTGACC GATTNCTTGC GGNCCNAATG GNCCGAACCC GCTCNNNTGG 
    CTAANATCGG CCGCAGCTGA TCTNCATCCA TGGCCTCAGC NACCGGCTGA 
    ACAACAGCNG NCAGANCGGT TNAAGGCAGG TCTTGCNACN TGACACNCTG 
    NGCACGGNGG GAAATGCAAT AGGTNAGGNT CTCGCTNAAT TACCTNCCCG 
    GGCCGNAAAC NACNCATGNC CCTATNTTAA ATACTTAACC ACTACAATAA 
    TTACATTTGT GTCACACCAT AATGCGACAA ATGATTTGTC ATATGTCAGA 
    TTATAACAAA CATGGAAATA AACAAATTTA CAGCTAATAT TCATGGACAA 
    TTTTAAATGA AAATAAATTT CTCTTTCTGC AATTTATGTT ATTAAGTCTC 
    AAAAGGTAAG AAATAAAATT GTTAAACCAA AAAACAGAAA GAAATCAAAT 
    TGTTTTTAAT GAAAAAAAGT TAAATTTAAA TTTGAATACT ACTTGACCAC 
    TACACTAGTT AAATTTGAGT CACCTTAATA CGACAAACTA TATTATTGTT 
    TTTGGCTAAA GATGCTACAA ATGATTTGTC ATCATAGTTA ATTGTAGTAT 
    TAAAATGGAA ATTGTTTTGA AAAGATACAC TTTCCGACTT TAAAGCAAAG 
    TTTCCTGCTA ATTTNATAAA CCCTTTTACT AAATTTTAN

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 22869002 [Map]; Strand: w
      • AT1G61890.1 - [+] show detail - MATE efflux family protein
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: 12-3768-1 - 3-prime edge 
    GCTGCAAGGT TGGTAACAAA ACTAACATTA TTCACTCCAA ACTATAGTTA 
    TTGTTTTGCT CCTTATGGTT TACTAATAAT ACACTTTTTT CAATTTATGT 
    GTAGTGTGAG AGTAAGCAAC GAGCTAGGAG CCGGAAACCC GAGAGCAGCC 
    GCGTTCTCCA CGGTCGTGAC AACGGGAGTA TCATTCTTAC TATCGGTTTT 
    CGAAGCCATC GTGGTCTTAT CGTGGCGTCA CGTCATCAGC TATGCGTTTA 
    CTGATAGTCC AGCAGTGGCT GAGGCCGTTG CGGATTTATC TCCCTTTTTA 
    GCCATCACAA TTGTCCTCAA TGGAATT

AT1G61890.1

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to karrikin; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G11670.1); Has 9516 Blast hits to 9487 proteins in 1915 species: Archae - 228; Bacteria - 6498; Metazoa - 145; Fungi - 328; Plants - 1371; Viruses - 0; Other Eukaryotes - 946 (source: NCBI BLink).
Link
InterPro Scan - TAIR