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12-3770-1

RIKEN Arabidopsis Ds transposon mutant lines

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20633896 [Map]; Strand: c
      • AT5G50720.1 - [+] show detail - HVA22 homologue E
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: 12-3770-1 - 5-prime edge
    GGGATAAACT AACAAAATCG GTTATACGAT AACGGTCGGT ACGGGATTTT 
    CCCATCCTAC TTTCATCCTA AAAACCTAAG CAACTCATTG CTTCACATTA
    TCTGGATAAA AAAATCAGTC AAGATATGAT GGATTGATCA TATTCCTAAG
    GTCAACAAAT TCATCCTTCT CATTTTTCCC TTTACGTTTA ATTTCTTATG
    AACTAAGTTT ATATCTTAAT TTCGTAAAGA CAGTTGATTA AAAGTTGTTG
    TGGTGGGAAA AAAGTCTTTG TGAGGGCCGA ACCTTGTCTT TAATTGGTTG
    CCCCGTAGGA CGGCCGGTTC AATCCCGGTT TGTTTCGAGT CTAAACATTT
    TACGAATCAA ATAGACTAAA GAAAGCATAA CTTTTTCAAA TAAGGATTAA
    TACGAATTGG AGAAAACATA GCTTTTTATA ATAAGTATTA AAACGAATTG
    GATGAAGTAA TGTATTTACG GTCACTTTAC CTTTATTTTG GTGTTTGGAA
    TACAGGTAGA GCATCAGGCT GAGTGAGTCA AAAAGAGGAG GGGACACAAG
    AGGGCTTCAC TGTTGGGGTC TCCAGTTTCT AATCTCTTTT TGCTTTTTCT
    ATTTTGTCTT ATTTCTCTTT TGATATACGG AAAAATGGGG TTGTTCTTAT
    TATGAGCCTC TGCTTGAATG TATGAAAAGA CCTTTTATTC GACGTTAAAC
    TATTATATTA AAGATTAAAA AATTGTAAAT CTTGTGTTGC CACTTCTTAA
    TCTTTCAAGA TATCATTGCC TTAAATTTAA TACTTATATA AGATCAATAG
    AATACN

AT5G50720.1

Model type
Protein coding
Short Description
HVA22 homologue E
Curator Summary
Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.
Computational Description
HVA22 homologue E (HVA22E); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to cold, hyperosmotic salinity response, response to abscisic acid stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: TB2/DP1/HVA22 related protein (InterPro:IPR004345); BEST Arabidopsis thaliana protein match is: HVA22 homologue D (TAIR:AT4G24960.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR